Protein Info for OH686_09215 in Pseudomonas sp. S08-1

Annotation: tRNA-i(6)A37 thiotransferase enzyme MiaB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 TIGR01574: tRNA-i(6)A37 thiotransferase enzyme MiaB" amino acids 4 to 441 (438 residues), 612.9 bits, see alignment E=3.7e-188 PF00919: UPF0004" amino acids 4 to 104 (101 residues), 98.1 bits, see alignment E=3.7e-32 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family" amino acids 4 to 438 (435 residues), 496.5 bits, see alignment E=6.2e-153 PF04055: Radical_SAM" amino acids 151 to 325 (175 residues), 92.7 bits, see alignment E=4.6e-30 PF01938: TRAM" amino acids 378 to 441 (64 residues), 69.5 bits, see alignment E=2.6e-23

Best Hits

Swiss-Prot: 89% identical to MIAB_PSEMY: tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase (miaB) from Pseudomonas mendocina (strain ymp)

KEGG orthology group: K06168, bifunctional enzyme involved in thiolation and methylation of tRNA (inferred from 89% identity to pmy:Pmen_3779)

MetaCyc: 68% identical to isopentenyl-adenosine A37 tRNA methylthiolase (Escherichia coli K-12 substr. MG1655)
RXN0-5063 [EC: 2.8.4.3]

Predicted SEED Role

"tRNA-i(6)A37 methylthiotransferase" in subsystem Ribosomal protein S12p Asp methylthiotransferase or tRNA processing

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.8.4.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB (Pseudomonas sp. S08-1)
MAKKLYIETHGCQMNEYDSSRMVDLLGEHQALEVTENPAEADVILLNTCSIREKAQEKVF
SKLGGWRALKQENPNLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAARR
TKKAQIDISFPEIEKFDRLPEPRVDGPSAFVSVMEGCSKYCTFCVVPYTRGEEVSRPLGD
VLLEITQLAEKGVKEVTLLGQNVNGFRGATPDGDIADFADLLYAVATIDGIERIRYTTSH
PLEFSDAIIQAHADIPQLVKFLHLPVQSGSDRVLAAMKRNHTALEYKSRIRKLKAAVPDI
CISSDFIVGFPGETEKDFEQTMKLIEDVGFDFSFSFIYSSRPGTPAADLVDDTPDEVKKQ
RLQILNGRLSQQGFEISRRMVGTTQRILVTDYAKRDPGQLQGRTENNRVVNFRCDNPSLI
GQFVDVEIYEALPNSLRGTLID