Protein Info for OH686_05730 in Pseudomonas sp. S08-1

Annotation: RNA helicase HrpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1353 TIGR01967: RNA helicase HrpA" amino acids 9 to 616 (608 residues), 1097.6 bits, see alignment E=0 amino acids 665 to 1350 (686 residues), 910.4 bits, see alignment E=9.4e-278 PF00270: DEAD" amino acids 80 to 227 (148 residues), 26.7 bits, see alignment E=1.3e-09 PF00271: Helicase_C" amino acids 292 to 409 (118 residues), 47.4 bits, see alignment E=6.5e-16 PF04408: HA2_N" amino acids 474 to 499 (26 residues), 25.6 bits, see alignment (E = 3e-09) PF21010: HA2_C" amino acids 500 to 558 (59 residues), 37.5 bits, see alignment (E = 8.8e-13) PF07717: OB_NTP_bind" amino acids 674 to 749 (76 residues), 73.2 bits, see alignment 5e-24 PF11898: DUF3418" amino acids 763 to 1350 (588 residues), 676 bits, see alignment E=1.6e-206

Best Hits

Predicted SEED Role

"ATP-dependent RNA helicase HrpA (EC 3.6.4.13)" (EC 3.6.4.13)

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.13

Use Curated BLAST to search for 3.6.4.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1353 amino acids)

>OH686_05730 RNA helicase HrpA (Pseudomonas sp. S08-1)
MTDTHESLLKNLDQTLLADRHRLRRQLHELQKQTPPDEAKLAQWLERFQASIAKVEARKR
SIPTIRYDDALPIAAKRDEIKAALAKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLIG
HTQPRRLAARSVATRVAEEIATPLGELVGYQVRFEDQSKDSTLIKLMTDGILLAETQHDR
FLEKYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKLIITSATIDLERFSKHFNGAPI
IEVSGRTYPVETWYRPLAAEVDEEGERLLDDLSVDQGILAALDEIAAHERAEGKRPGDVL
VFLPGEREIREAAEVLRKANLRLTEVLPLYARLTPAEQQKIFAPMGARKIVLATNVAETS
LTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYSE
EDFLARPEFTDPEILRTNLAAVILQMLHLRLGSIEDFPFIEPPDGKAISDGFTLLQELSA
VNRESQLTPLGRQLARLPIDPRLGRMVLEAAKLGSLDEILIVASALSVQDPRERPMDRQQ
AADQAHAQWKDVDSDFAALINLWRGFEEKRQELGSNPLRNWCKKNFLNYLRLREWRDAHR
QLVLIARELLLSASKSADGRVDRSPAGQPTDKAPQKGQSAQGPQPTKDTKVNVIVREQAE
AGEAAQRAKSYAAVHKAILSGLLSQIGQKTEEGDYLGARQRRFWIHPSSVIGRKKPTWVM
TAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKRRGQVVAFEQVTLYGLIV
VGRRPVHFGPVDPVASRELFIRDGLVRGEINSRAKCLAANRELLDRLDELEAKARRRDIL
ADEETLYAFYEARIPAEIHQAATFEHWYKSESAKNPQLLIMREEDVLARDAKEVTAAQYP
DILQLGELQLPLTYHFEPNHPRDGVTLRVPAPLLPQLPADRLEWLVPGLIEAKAIALVRN
LPKALRKNFVPVPDFVGAALSKIAFGQGSLPESLGRELTRMTGARVSDEAWEEAAQQLES
HLKMNLEVVDARGKFLGEGRDLAELTARFAEASQAALAIPQQKQEQKPVEAKAFAQVAEK
TQQKIAGISMTVFPALVEEGGVVKEGRFPTQAEADFQHRRALQKLLLQQLAESAKFLRGK
LPGLTELGLLYREMGRPEALVEDILLASLDACVLEGEATLPRDGAALAALAEKKRGDWTA
HAERIAKLVLEILKLAHGLQKRFKGKIDLAQAMALNDIKQQLANLVYPGFVRETPGEWLK
EIPRYLKAIEQRLDKVGSQVQRDRVWTGELTAAWEQYQARAAKHAQEGKRDPELVLYRWM
LEEYRVSLFAQQLGTKMAVSDKRLSKQWSQVEA