Protein Info for OH686_04700 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 44 to 64 (21 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details PF05230: MASE2" amino acids 16 to 104 (89 residues), 104.6 bits, see alignment E=2.3e-34 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 184 to 345 (162 residues), 164 bits, see alignment E=1.2e-52 PF00990: GGDEF" amino acids 188 to 342 (155 residues), 143.4 bits, see alignment E=5.4e-46

Best Hits

KEGG orthology group: None (inferred from 61% identity to pfl:PFL_4532)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>OH686_04700 hypothetical protein (Pseudomonas sp. S08-1)
MTMDRSTGSGLSFAKRIYLPRGIGLGIGFFCVAFALWPLRPAPWLWALLVFNGFLWPHLA
YQLARLSATPYKAERRNLLIDSVFGGFWAATMQFNVLPTVTILAMMAMNNIAAGGARFFL
KGSLAMLAGTGLALLLFGPAFNPDTSMPQLYACLPMLILYPLALGWVSYRLSIKLAEHKQ
ALRAASRTDSLTRLFNHGYWQDLLQSEFIKCRGGQQRATVALIDVDHFKRINDQHGHLVG
DSVLRLLSEKLVLSLRQEDMAGRYGGDEFCVILPNTPPVLAGEVMERLRQELAEVRSPLA
PELRITLSIGLAGYSPFQLDATQWLNAADQALYQAKSRGRDQVVTASETLVATDEELQAY
PGA