Protein Info for NOLOHH_18835 in Escherichia coli ECOR27

Name: ydeU
Annotation: ECSE_1600 family autotransporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1806 PF13018: ESPR" amino acids 1 to 48 (48 residues), 53.9 bits, see alignment (E = 4e-18) TIGR04393: T5SS/PEP-CTERM-associated repeat" amino acids 164 to 209 (46 residues), 37.3 bits, see alignment (E = 3.3e-13) amino acids 267 to 313 (47 residues), 32.5 bits, see alignment (E = 1e-11) amino acids 318 to 369 (52 residues), 24.2 bits, see alignment (E = 4e-09) amino acids 375 to 417 (43 residues), 25.3 bits, see alignment (E = 1.7e-09) amino acids 580 to 624 (45 residues), 35.7 bits, see alignment (E = 1e-12) TIGR02601: autotransporter-associated beta strand repeat" amino acids 1253 to 1283 (31 residues), 22 bits, see alignment (E = 1.6e-08) PF18883: AC_1" amino acids 1332 to 1438 (107 residues), 93.5 bits, see alignment 1.8e-30 PF03212: Pertactin" amino acids 1335 to 1452 (118 residues), 40.2 bits, see alignment 6.4e-14 TIGR01414: outer membrane autotransporter barrel domain" amino acids 1346 to 1806 (461 residues), 408.2 bits, see alignment E=7.3e-126 PF03797: Autotransporter" amino acids 1525 to 1784 (260 residues), 149.7 bits, see alignment E=2.8e-47

Best Hits

KEGG orthology group: None (inferred from 100% identity to ecy:ECSE_1600)

Predicted SEED Role

"FIG00637907: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1806 amino acids)

>NOLOHH_18835 ECSE_1600 family autotransporter (Escherichia coli ECOR27)
MNRIYRVIWNCTLQVFQACSELTRRAGKTSTVNLRKSSGLTTKFSRLTLGVLLALSGSAS
GASLEVDNDQITNIDTDVAYDAYLVGWYGTGVLNILAGGNASLTTITTSVIGANEDSEGT
VNVLGGTWRLYDSGNNARPLNVGQSGTGTLNIKQKGHVDGGYLRLGSSTGGIGTVNVEGE
DSVLTTELFEIGSYGTGSLNITDKGYVTSSIVAILGYQAGSNGQVVVEKGGEWLIKNNDS
SIEFQIGNQGTGEATIREGGLITAENTIIGGNATGIGTLNVQDQDSVITVRRLYNGYFGN
GTLNISNNGLINNKEYSLVGVQDGSHGVVNVTDKGHWNFLGTGEAFRYIYIGDAGDGELN
VSREGKVDSGIITAGMKETGTGNITVKDKNSVITNLGTNLGYDGHGEMNISNEGLVVSNG
GSSLGYGETGVGNVSITTGGMWEVNKNVYTTIGVAGVGNLNISDGGKFVSQNITFLGDKA
SGIGTLNLMDATSSFDTVGINVGNFGSGIVNVSNGATLNSTGYGFIGGNASGKGIVNIST
DSLWNLKTSSTNAQLLQVGVLGKGELNITTGGIVKARDTQIALNDKSKGDVRVDGQNSLL
ETFNMYVGTSGTGTLTLTNSGTLNVEGGEVYLGVFEPAVGTLNIGAAHGEAAADAGYITN
ATKVEFGSGEGVFVFNHTNNSDAGYQVDMLITGDDKDGKVIHDAGHTVFNAGNTYSGKTL
VNDGLLTIASHTADGVTGMGSSEVTIASPGTLDILASTNSAGDYTLTNALKGDGLMRVQL
SSYDKMFGFTHATGTEFAGVAQLKDSTFTLERDNTAALTHAMLQSDSENTTSVKVGEQSI
GGLAMNGGTLIFDTDIPAATLAEGYISVDTLVVGAGDYTWKGRNYQVNGTGDVLIDVPKP
WNDPMANNPLTTLNLLEHDDSHVGVQLVKAQTVIGSGGSLTLRDLQGDEVEADKTLHIAQ
NGTVVAEGDYGFRLTTAPGDGLYVNYGLKALNIHGGQKLTLAEHGGAYGATADMSAKIGG
EGDLAINTVRQVSLSNGQNDYQGATYVQMGTLRTDADGALGNTRELNISNAAIVDLNGST
QTVETFTGQMGSTVLFKEGALTVNKGGISQGELTGGGNLNVTGGTLAIEGLNARYNALTS
ISPNAEVSLDNTQGLGRGNIANDGLLTLKNVTGELRNSISGKGIVSATARTDVELDGDNS
RFVGQFNIDTGSALSVNEQKNLGDASVINNGLLTISTERSWAMTHSISGSGDVTKLGTGI
LTLNNDSAAYQGTTDIVGGEIAFGSDSAINMASQHINIHNSGVMSGNVTTAGDVNVMPGG
TLRVAKTTIGGNLENGGTVQMNSEGGKPGNVLTVNGNYTGNNGLMTFNATLGGDNSPTDK
MNVKGDTQGNTRVRVDNIGGVGAQTVNGIELIEVGGNSAGNFALTTGTVEAGAYVYTLAK
GKGNDEKNWYLTSKWDGVTPPDTPDPINNPPVVDPEGPSVYRPEAGSYISNIAAANSLFS
HRLHDRLGEPQYIDSLHSQGSASSMWMRHVGGHERSRAGDGQLNTQANRYVLQLGGDLAQ
WSSNAQDRWHLGVMAGYANQHSNTQSNRVGYKSDGRISGYSAGLYATWYQNDANKTGAYV
DSWALYNWFDNSVSSDNRSADDYDSRGVTASVEGGYTFEAGTFSGSEETLNTWYVQPQAQ
ITWMGVKDSDHTRKDGTRIETEGDGNVQTRLGVKTYLNSHHQRDDGKQREFQPYIEANWI
NNSKVYAVKMNGQTVGREGARNLGEVRTGVEAKVNNNLSLWGNVGVQLGDKGYSDTQGML
GVKYSW