Protein Info for MPMX26_02988 in Acinetobacter radioresistens SK82

Annotation: Aldose sugar dehydrogenase YliI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF07995: GSDH" amino acids 58 to 385 (328 residues), 418.5 bits, see alignment E=3.3e-129

Best Hits

KEGG orthology group: None (inferred from 66% identity to abm:ABSDF3614)

Predicted SEED Role

"PQQ-dependent oxidoreductase, gdhB family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>MPMX26_02988 Aldose sugar dehydrogenase YliI (Acinetobacter radioresistens SK82)
MYNNKFRITSILFFSLFTLYGCNSNQGHTNTPESHQEADQTSTSKQLQTFKVQQITQFNE
PWALAVLPDQRLLVTERKGQLKLFDPLTKRTVNITGLPEVAYGGQGGLGDIVLHPNFNQN
QWVYYSYAEKGAGGQGAAVARARLDLNSAVPALKNHEVIWRQIPKVSGQGHYGHRLAFDH
EGKLWIASGERQKFTPAQDMKSNLGKVLHLNDDGTPASNNPFAQQSRVTAEIWSFGHRNP
LGIAFDAKNQLWVVEMGPKGGDELNLIRKGKNYGYPIVSNGDHYDGKPIPDHSTRPEFQK
PELSWTPVISPSSLLIYQGRQFPKWQGKALIGGLSSEALIIVDLEQNPVKEIQRIDMKER
IRGLQEAQDGSIWVIEDGKNAKLLKLTAGV