Protein Info for MPMX26_02676 in Acinetobacter radioresistens SK82

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 38 to 62 (25 residues), see Phobius details amino acids 98 to 122 (25 residues), see Phobius details amino acids 142 to 169 (28 residues), see Phobius details amino acids 181 to 203 (23 residues), see Phobius details amino acids 208 to 231 (24 residues), see Phobius details amino acids 240 to 279 (40 residues), see Phobius details TIGR00765: YihY family inner membrane protein" amino acids 18 to 276 (259 residues), 194.1 bits, see alignment E=1.9e-61 PF03631: Virul_fac_BrkB" amino acids 28 to 276 (249 residues), 196.1 bits, see alignment E=4.2e-62

Best Hits

Swiss-Prot: 81% identical to Y3168_ACIAD: UPF0761 membrane protein ACIAD3168 (ACIAD3168) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K07058, membrane protein (inferred from 81% identity to aci:ACIAD3168)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (414 amino acids)

>MPMX26_02676 hypothetical protein (Acinetobacter radioresistens SK82)
MLNFLKKLPFYDKTWFKFILFVIRRFEADRCRELAGSLTYTTLFAIVPMLTVFLVIISSI
QALEPARQQLQQLIYSNFLPKSTIAFDKMLNAFTEKSSNLTVIGVLFLFVTTIMMLSTIE
TAFNRIWRVKETRGGIVGFMRYWTIISLGPIVLGSAFVISSALASLSILSNNFAGYEMDG
AFLLSLLSIALTIAGFFIIYWTIPNRNVPMIAAALAGVFSAIVFEMLKNLFGTIMSNFTS
YEIVYGAFAAIPIFLLWIYLSWNIVLLGVEVSFAITAFHSRYGQTRHPVLMLLDVLDLFY
RKQKLGETVTEKEAMNILGRGEIGRWPAYVAMLEEQNLVKRTENNDYVLVRNLSQVDFWS
FYKALPYPLPRRNDVGNIHPDDEWMQKLGPVLIESDDYLSVKLSVPLSTIFERK