Protein Info for MPMX26_02492 in Acinetobacter radioresistens SK82

Annotation: Lysine-specific permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 487 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 47 to 66 (20 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details amino acids 128 to 147 (20 residues), see Phobius details amino acids 158 to 180 (23 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details amino acids 242 to 262 (21 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details amino acids 345 to 363 (19 residues), see Phobius details amino acids 369 to 392 (24 residues), see Phobius details amino acids 414 to 433 (20 residues), see Phobius details amino acids 445 to 465 (21 residues), see Phobius details PF00324: AA_permease" amino acids 18 to 473 (456 residues), 493.3 bits, see alignment E=7.1e-152 PF13520: AA_permease_2" amino acids 21 to 430 (410 residues), 128.3 bits, see alignment E=3.9e-41

Best Hits

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 91% identity to aci:ACIAD0700)

Predicted SEED Role

"Lysine-specific permease" in subsystem YeiH

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (487 amino acids)

>MPMX26_02492 Lysine-specific permease (Acinetobacter radioresistens SK82)
MSEINQPAKLKRKLGARHLNMIAIGGSIGTGLFLASGSTIANAGPGGALLAYGLIGIMIY
FLMTSLGELATHNPTSGAFFTYGSKYVEDGFGFALGWNYWYNWAITVAFELVAVQFIMKF
WFPDIPGFYWSAIFLAIIFGINALTVKGFGESEFWFSMVKVVAIIAFIIIGIAMIIKIML
TPGMITFSNWTKGEAPFVGGLQAMIGVAMIAGFSFQGTEMVGVAAGESKDPKRTIPLAIK
QIFWRILLFYIVCIFIIGTLVSYDDPRLLQAAASEDIALSPFTLLYEQAGFAFAASLMNA
VILTAILSAGNSGMYSSTRMLFDMAREGRAPKIFSKLDLRGVPMNALYATTAIAALCFLT
TFVGEQEVFNWLLNMSGMCGFIVWLGIAISHYRFRKGYIAQGYKLEDLAYRAKFFPFAPW
FAFILCSIIILGQNYEAVTGGKIDWIGLLSTYISIPLFLVIWFGYKLKHKTKLVSYKEMD
VKPGNLD