Protein Info for MPMX26_00812 in Acinetobacter radioresistens SK82

Annotation: Membrane-bound lytic murein transglycosylase F

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 20 to 34 (15 residues), see Phobius details PF01464: SLT" amino acids 213 to 316 (104 residues), 78.9 bits, see alignment E=2.3e-26

Best Hits

KEGG orthology group: None (inferred from 74% identity to aci:ACIAD2827)

Predicted SEED Role

"Transglycosylase, Slt family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (369 amino acids)

>MPMX26_00812 Membrane-bound lytic murein transglycosylase F (Acinetobacter radioresistens SK82)
MHSSSTSGSRLSLNSLFSTLPVRLLVLSTALVPWHNINASKASQYNSVVNTNTLTVVTVE
SPTTLFKDGKIMYGFGYDLVRNYAQNLNVRLELKTVADNATALKWVAQGKANMAMTTADF
NTIEKHQLTSFSASCGDTTSLVKNGLNPALNWVFKQAEEPLAATASGYICQGKQNGAIRQ
LASFYNRNVVQPDAWKTIQRDLSKRMPIYKASFQQSAERYDLDWHLLAAIGYQESYLKPN
SVSPTGVRGLMMLTSSTAKAMGVQNRTDPHQSIQGGAKYYDLMLDKFSDVPYPDRNWYAL
VAYNMGPGAVGQIQKRIEIQGRNPNNWVNLYDYLERHQTSNGRYRQAVQYVTRIRAYLEH
IKKSDLVTI