Protein Info for MPMX26_00315 in Acinetobacter radioresistens SK82

Annotation: Ribonuclease E

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1170 TIGR00757: ribonuclease, Rne/Rng family" amino acids 13 to 422 (410 residues), 526 bits, see alignment E=3.6e-162 PF00575: S1" amino acids 36 to 116 (81 residues), 31 bits, see alignment 4e-11 PF10150: RNase_E_G" amino acids 119 to 388 (270 residues), 341.6 bits, see alignment E=4.8e-106 PF20833: RNase_E_G_Thio" amino acids 400 to 483 (84 residues), 96.1 bits, see alignment 1.7e-31

Best Hits

KEGG orthology group: K08300, ribonuclease E [EC: 3.1.26.12] (inferred from 73% identity to acd:AOLE_17430)

Predicted SEED Role

"Ribonuclease E (EC 3.1.26.12)" in subsystem RNA processing and degradation, bacterial or Ribosome biogenesis bacterial (EC 3.1.26.12)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.26.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1170 amino acids)

>MPMX26_00315 Ribonuclease E (Acinetobacter radioresistens SK82)
MKRMLINATHAEEVRVALVTGHRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GANRQGFLSMREIANSYFKADSRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGAVREELKEMLASLDVPRGMSVIVRTAGIGRSQEELQT
DLQHLLDLWTQIQSTANSGPSPMLVHQEAGVVTRAIRDYLRDDVSEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGHDVEETALSTNLEAAEEIARQLRLRDIGGLIVIDFIDMTRDRNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALHERQGEVQVEVPVEIAAFMLNEKRHSLVYLEQTSNTRVTVLPHPHLETPHY
EISYNPEGFAPTSYERTEATRSSEKNLGYESADWHLEEAEQVGQSTAAPTDKPGKPQNRK
TQPQAAAPQQPAQVPAAKTATSSPCAWLENLFVQKQAHTVDHSRTANNAAAAIEQMVNTG
AVSRGQFGQINNAAVAVQPETVVAPVAANNVYLSQPAGNSAAKTDAQPLEREEKASGQQR
HNKKRNGRDRDNRDRNRESREQQSETSTQVHEEVVQLSRQEQRDQKRQQQKRQPQQEHQV
ESQQSEQSYPVPRRDRNQQRPPRPNRYRDPSVLNEQPVAAAAPAAVTDSNQVKVDVIETP
NNEALATALVINIDQGQSEIVTLNSADTASTVNAEEAPVEVKPEPAAPAKKEAVNAQPAP
AEAKAKAKVEEQPRRASNDPRMRRKQGGSQQKPQQEVLPKLSPSQVPLLAQYTVGSLIRH
VYGEDCTVLIEQFGLVPTFNRALLKFTEQYISTLSVTTTTERTEPVEKTPVTRDAAAPMA
KPAQEQEPAPVLPLTPSQNATPRVANDPRERRRLAKLAAEQALEQSKASASSQAEEQPAT
VQPENPVAENPAEHVNLEINTQADTTSVGTEQDAADAASHHAKVVAETQAQDPAIQTAAA
MSEATAAASPSAIVEEAQAQQAAEPAAPAEKKAPKPSKVEKSQPADQQPAQASVEETAED
NKTTTADKDKPARPRRPRGRPPKKATPTAE