Protein Info for MPMX26_00272 in Acinetobacter radioresistens SK82

Annotation: RecBCD enzyme subunit RecB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1234 transmembrane" amino acids 1158 to 1174 (17 residues), see Phobius details PF00580: UvrD-helicase" amino acids 16 to 469 (454 residues), 146.3 bits, see alignment E=3.8e-46 PF13245: AAA_19" amino acids 19 to 99 (81 residues), 27.9 bits, see alignment 5.7e-10 PF13361: UvrD_C" amino acids 478 to 857 (380 residues), 83.8 bits, see alignment E=4.2e-27 PF12705: PDDEXK_1" amino acids 980 to 1195 (216 residues), 26.2 bits, see alignment E=1.9e-09

Best Hits

Predicted SEED Role

"Exodeoxyribonuclease V beta chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1234 amino acids)

>MPMX26_00272 RecBCD enzyme subunit RecB (Acinetobacter radioresistens SK82)
MNEPQAISEYPIADMCFSGLHLIEASAGTGKTYTLSSLIVRILIEKYLPNQIIATTFTRA
AAAELKSRIRSRLVEAYQYFNDCQDLTEIEMLHKAEQEKDPLYQVLCKQFSTQVGYVCER
LKLVIDQLDELFVSTLDSFSQKLLREFAFESGKIERAQLTEDAKAYSQQIVHDILREWIQ
AQPQPLIDYLLLSKQLKNTDGYLAIVENSLNFSSAQFMPVAAPVMDLEQFEAELDLLLKL
DLSLVEGLADYYRADGQHNSIVGKKWRTEQLMETTLCQNLPDFIKALHTQRSYALFAAHW
TDIFKCITDLATKKVLNKCSAEVLEYFENHQIIQGLRRFCECVANLKTDLSRLDTYLQFY
ISQEVRKRLPQLLQQRGETTFSQQIRTLAEALQGEQGQRFAVYVQARYPLIVVDEFQDTN
QDQDNMLASIWRHPQRHQHSCMIMVGDPKQAIYGFRGGDMLTYIKARQDVLIKQGKLYTL
RQNHRSVPELVEVVDALFQREVNFGEEVIYTPIQAGARQHPPLTDRQRKNYCPLRWVQLS
DKNKEAEQVAWKIRQLLNHGIAKELLFDESGGQRPLNENDIAILSKNHDGLDKAQYALES
LGIRVNRPSKRSVFDCQVARDVGALLTAIMHPYDEGKVKRALLSRLLDFNLQSLVELEQR
TDGLSSFIHKFDDIRELWLERGFLSAWQYCLQHFQVWQKLVAIASKDNERAVVNLRHLTE
VLSQHSEIYPGAKNLYYWYFKQLQSPSEREWELERRLSNEAGVQLMTIHQSKGLEFKVVF
LLGADKAFKEMNKTLNFSTVEQLNPVTGQLEKQRVIAVADKNLLDENAVNQHQERAAAEN
RRLWYVALTRASHRVYAMLQDTEGKARHSLAFWRNRAEPFVHPHCMDEPLLEQLPAKVSA
SSVSKQISVQALNLPQQRFYPRAKTSFSYLAQHLKTRKIFDPLANEVKRPESAEDELHVV
DKAYLPATQPLSWIKQNFPMGTVAGNFLHEIFEHIDFQEPADWILEIRRRFKNDYSGLWN
ELRDKYQRDFPEQAEDEQLLLNWLAEWLQQVLGTPLHAGFELKHLQPEQHLAEFPFCLAL
SDHVLAIQRIHQLFAEYGIDMPELNPAESARYLNGSIDLVYFDGHQYHIADYKSNFLGND
QSDYNHASIRASMSHSSYWLQAGLYLVALHRYLSIQMQNYEISRDLGGASYLYLRGMNGQ
PDHGMYYWKPSTEFILRLDALLGYFIEDKMSKIA