Protein Info for MPMX26_00134 in Acinetobacter radioresistens SK82

Annotation: Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 TIGR00730: TIGR00730 family protein" amino acids 23 to 198 (176 residues), 196.4 bits, see alignment E=1.7e-62 PF18306: LDcluster4" amino acids 34 to 135 (102 residues), 52 bits, see alignment E=6.2e-18 PF03641: Lysine_decarbox" amino acids 66 to 196 (131 residues), 151.8 bits, see alignment E=1.2e-48

Best Hits

Swiss-Prot: 45% identical to LOGH_RHOFA: Cytokinin riboside 5'-monophosphate phosphoribohydrolase (fas6) from Rhodococcus fascians

KEGG orthology group: K06966, (no description) (inferred from 76% identity to aci:ACIAD0229)

Predicted SEED Role

"Lysine decarboxylase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (207 amino acids)

>MPMX26_00134 Putative cytokinin riboside 5'-monophosphate phosphoribohydrolase (Acinetobacter radioresistens SK82)
MMNSVLEMRNAPVNPEPRTTQHLVALYCGSRPGNNPIYREKAIELSQGLAQHGFGIVYGG
ASIGLMGQVADSVLEAGGEVVGVIPEFMLDYEIAHNQLTELHIVASMHERKALMAERASA
FVALPGGLGTFEEILEIATWGQLNQHQKPMILYNVNGFYNALINQLDHAVQEGFLPAQHR
AKIVVCEHSKAIFNAMKNLNSPSRFAI