Protein Info for MPMX19_06986 in Azospirillum sp. SherDot2

Annotation: sugar efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 52 to 75 (24 residues), see Phobius details amino acids 87 to 105 (19 residues), see Phobius details amino acids 111 to 136 (26 residues), see Phobius details amino acids 144 to 166 (23 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details amino acids 223 to 246 (24 residues), see Phobius details amino acids 260 to 278 (19 residues), see Phobius details amino acids 288 to 307 (20 residues), see Phobius details amino acids 313 to 331 (19 residues), see Phobius details amino acids 350 to 371 (22 residues), see Phobius details amino acids 377 to 395 (19 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 288 (263 residues), 107.3 bits, see alignment E=8e-35 amino acids 230 to 396 (167 residues), 49.9 bits, see alignment E=2.3e-17 PF00083: Sugar_tr" amino acids 55 to 190 (136 residues), 26.9 bits, see alignment E=2.2e-10

Best Hits

Swiss-Prot: 41% identical to YDER_BACSU: Uncharacterized MFS-type transporter YdeR (ydeR) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 74% identity to mch:Mchl_0717)

Predicted SEED Role

"MFS permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (412 amino acids)

>MPMX19_06986 sugar efflux transporter (Azospirillum sp. SherDot2)
MQNARESGRRHRPDGGLSRGTTLIFAIAAGISVANVYFAQPLLDAIARDFGISPAAIGLV
VTLTQVGYALGLIFIVPLGDMLDSRRLVIGQGLLSVAALVAVATAKSEGVLFTGLAAMGL
LAVVVQVLVAFAATLAAPAERGRAVGTVTSGVVIGILAARFVAGLLADVGGWRAVYLTSA
VLMAVMVGLLTRVLPRNPLPGSTDSYAETLRSIPSLFFRDRVLLARGLLALLIFATFSTF
WTSLVLPLSTAPFNYSHTQIGLFGLVGLAGVAAATGAGRLADRGLGQWTTALSLTLLLLS
WGLIAFLPSSIPLLLIGVVLLDLAVQAVHVTNQSIIVARHPTARSRLVGGYMVFYSIGSA
IGASAATMVYAHAGWHGVSMLGAAFSAAAMLIWAGARHLSVGSEATECANGP