Protein Info for MPMX19_06980 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 signal peptide" amino acids 1 to 43 (43 residues), see Phobius details transmembrane" amino acids 58 to 89 (32 residues), see Phobius details amino acids 111 to 130 (20 residues), see Phobius details amino acids 152 to 182 (31 residues), see Phobius details amino acids 194 to 218 (25 residues), see Phobius details amino acids 233 to 256 (24 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 307 to 325 (19 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details amino acids 396 to 418 (23 residues), see Phobius details amino acids 423 to 441 (19 residues), see Phobius details amino acids 455 to 477 (23 residues), see Phobius details amino acids 497 to 525 (29 residues), see Phobius details amino acids 535 to 554 (20 residues), see Phobius details amino acids 589 to 610 (22 residues), see Phobius details PF06808: DctM" amino acids 60 to 375 (316 residues), 171.1 bits, see alignment E=1.8e-54 amino acids 382 to 613 (232 residues), 158.9 bits, see alignment E=9.3e-51

Best Hits

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (650 amino acids)

>MPMX19_06980 hypothetical protein (Azospirillum sp. SherDot2)
MSTTSPSLSPRTVRLSVISLLLLAAVAVALYVLPVPGAGALAEQDGWRGWFGHNMAPIMF
GVLVVMLLLGYPVAFALAANGLLFGLIGIELGLFRPDLFQALPERIYGTMNNDVLLAVPF
FTFMGLVLERSGMAEDLLDTIGQLFGSIRGGLAYAVIFVGALLAATTGVVAASVISMGLI
SLPIMLRYGYDRRLASGIIAASGTLAQIIPPSLVLIVMADQLGRSVGDMYEAAFIPGLLL
AGLYALYVFIVSLIWPKAAPGLPPEAIAYREPNGARGVWQLGVLALFSGAVAYWVMGRTG
VKSGADYVVLLLSVAVTVAFLAATFNRTFGAQRLALQAAVTAVLTAGAAWLTLNGSTTLA
LLGDSVAAGALYALAVALVERASGRRLISRMAEQATFVMVPPLALIFLVLGTIFIGLATP
TEGGAMGAVGALALAAMKKRLSFDMVRQATYSTAKLAAFVLFILIGARVFSLTFYGVNGH
VWVEELMVSLPGGQMGFLIAVSVMVFLLAFFLDFFELAFIVIPLLAPAADRLGIDLVWFG
IILAVNMQTSFMHPPFGFSLFFLRSVAPKLPYIDRVTKKETAPVLTSQIYWGAVPFVVIQ
LVMVALVIAFPQMVMHYKSAAVKLDDKQIEEQFQGLGSGMDNELPPLEFK