Protein Info for MPMX19_06959 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 34 to 371 (338 residues), 352.7 bits, see alignment E=4.9e-109 PF13433: Peripla_BP_5" amino acids 35 to 345 (311 residues), 65.4 bits, see alignment E=8e-22 PF01094: ANF_receptor" amino acids 58 to 349 (292 residues), 41.9 bits, see alignment E=1e-14

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 59% identity to bbt:BBta_6215)

Predicted SEED Role

"Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (409 amino acids)

>MPMX19_06959 hypothetical protein (Azospirillum sp. SherDot2)
MNRYAVTAAVAACLFAHSLSQPALAQSAAYSDGKIKIGILTDLSGQLSDSTGQGSIAAAQ
MAVEDFGGAVNGTPVELIFADHQNKADVGASTARRWYDVDQVDAIMDVPNSAVALAVQQI
TKEKNRVAIFSSPASSDLTGKACTPNGIHWTYDTYALAHVTGEAVVASGFDSWYFLTSDY
AFGHALERDTGAVVESQKGKVVGSVRMPANNADFSSFLLQAQASPAKVVALATAGADTQN
AIKQAAEFGLGQSGKNIVALLLAISEVHALGLPATQGIMLTTPFYWDMDDETRAFAKRFF
EKRKAMPTFYQAGVYGAVSHYLKAIKAAGTDAAPTVMKTMKETPVNDFMTKNGTVREDGR
VLRDMYLFQVKTPAESKSPWDYYKLVRSVPADRAYRPLSESDCPLVKKM