Protein Info for MPMX19_06945 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 38 to 376 (339 residues), 349.5 bits, see alignment E=3e-108 PF13433: Peripla_BP_5" amino acids 39 to 350 (312 residues), 47.8 bits, see alignment E=1.2e-16

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 59% identity to bbt:BBta_6215)

Predicted SEED Role

"Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (413 amino acids)

>MPMX19_06945 hypothetical protein (Azospirillum sp. SherDot2)
MRAITVRVPGLRALTATAVAALTIGLAGGAAAEISGKTVKIGVLTDMSGPYSDNVGAGAV
LAAQMAAEDFGGKVNGAAIEIVSADHQNKADVGSGIARRWYDVEGVDAITEVVSSAVALS
VQGLSREKNRMFLATGPGTPDLTGKACSPVGVHWAYDNYALPTVATTALVKRGLKDWYFL
TADYSFGHALEGEATRVVKANGGTVVGAVRAPLNTADFSSYLLQAQASTATVVGLANAGA
DMINAVKQANEFGITAGGKTMAALLVNLPDIHALGLESAQGLTFAESFYWDMNDETRAWS
KRFMDRFNGRAPGGLQAAVYGAVTHYLKAIQAIDSDDATKVAEQMRKTPIDDFYTKNGSI
RPDGRVIRDMYLMQVKKPSESKGPWDYYKILETVPGDKAFRPMDQGGCPLVAK