Protein Info for MPMX19_06937 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 46 to 383 (338 residues), 380.2 bits, see alignment E=2.1e-117 PF13433: Peripla_BP_5" amino acids 47 to 358 (312 residues), 57.7 bits, see alignment E=1.8e-19 PF01094: ANF_receptor" amino acids 69 to 381 (313 residues), 32.3 bits, see alignment E=9e-12

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 59% identity to bja:blr6648)

Predicted SEED Role

"Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>MPMX19_06937 hypothetical protein (Azospirillum sp. SherDot2)
MMKLMSHGVLAATAAGIALTFGTLSWSAAAQTTAAQSAPAQKATGPIRIGVLTDLSGSLA
DLSGSGSVEAVKMAVEDFGASVLGRPVEVLSADHQNKADIGVQIAADWYDNKNVEVVIDL
PNSAVMLAIQELTRRKNKIVFGTAGGSSDFTGKSCSPNGIHWVYDTYALAAGTGRTMVKQ
GGDSWYFITLDYSFGLSLERDTAAFVTGAGGKVLGSARHPLNSADFSSYLLQAQASGAKV
IGLANAGGDLINTVKQAAEFGITKQGQKLAGLLMFLSDIHALGLETAQGLVLTESFYWDQ
NEETRAFSKRFFERTGRMPTMVQAGDYGAITHYLKAVKAAGTIDAPAVMKTMRDTPIDDF
MTRNGRIREDGRVLRDMYLFEVKTPADSKGKWDYYKQLGVIAAADAARPLAESECPLVRK
SADAGKP