Protein Info for MPMX19_06892 in Azospirillum sp. SherDot2

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 36 to 57 (22 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 199 to 217 (19 residues), see Phobius details amino acids 222 to 242 (21 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 111 to 280 (170 residues), 107.9 bits, see alignment E=2.7e-35

Best Hits

Swiss-Prot: 52% identical to SSUC_ECOLI: Putative aliphatic sulfonates transport permease protein SsuC (ssuC) from Escherichia coli (strain K12)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 98% identity to azl:AZL_a01240)

MetaCyc: 52% identical to aliphatic sulfonate ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-56-RXN [EC: 7.6.2.14]

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>MPMX19_06892 Putative aliphatic sulfonates transport permease protein SsuC (Azospirillum sp. SherDot2)
MSSLDSSFGVRRAATPQAPAAAKRVRRPISDPPHRIGTRAHVALSWIAPLLLLAVWEGLA
RNGWIEPHVLPAPSKVVATAWKLALHGTLLRDLGTSLLRAAAGFAIGGGIGFALGTLVGF
SRLAEALVDRSVQMIRAIPFLALLPLVIVWFGVGEGQKIFLVSLGVAFPVYINTTLGIRQ
VDPKLLELGRVRGLSTALLIRRIVLPGALPSILTGVRYALATAWLALVVAETIGAQAGLG
FLAMDAREFLRTDVIVLTIVIYALIGVLADSLARLLERRLLAWHPNYGAAR