Protein Info for MPMX19_06840 in Azospirillum sp. SherDot2

Annotation: Glutathione transport system permease protein GsiD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 30 to 54 (25 residues), see Phobius details amino acids 96 to 122 (27 residues), see Phobius details amino acids 144 to 169 (26 residues), see Phobius details amino acids 219 to 240 (22 residues), see Phobius details amino acids 260 to 283 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 112 to 291 (180 residues), 79 bits, see alignment E=2e-26

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 94% identity to azl:AZL_c03300)

Predicted SEED Role

"Dipeptide transport system permease protein dppC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>MPMX19_06840 Glutathione transport system permease protein GsiD (Azospirillum sp. SherDot2)
MKTHSSTEPRASTGSRASTGSLAAWSGYRINLVGLAAFSVVLFWALVALFAPYITPHSVG
EMIDLDYFGPMRSGLWLGSDYLGRDMLSRIIYGARYTVGISLAAVSIACFTGVVLGMTSA
VLRGPVDMVVSRILDAMNSIPSKLFGLMVVAAVGSSIPVLILTLSVIYVPGAYRFSRALA
INIDTMDFIMVARIRGERLPYLIASEILPNIIGPVLADLGLRFVFIVLLLSGLSFLGLGV
QPPYADWGALVRENIGGLPFAAPAVIVPSLAIATLTISVNLLIDNLPQKIRDRSAS