Protein Info for MPMX19_06830 in Azospirillum sp. SherDot2
Annotation: Maleate isomerase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01799, maleate isomerase [EC: 5.2.1.1] (inferred from 69% identity to mlo:mlr7137)Predicted SEED Role
"Arylmalonate decarboxylase (EC 4.1.1.76)" (EC 4.1.1.76)
MetaCyc Pathways
- nicotinate degradation II (1/5 steps found)
- nicotinate degradation I (1/6 steps found)
- picolinate degradation (1/7 steps found)
- nicotine degradation III (VPP pathway) (3/10 steps found)
- nicotine degradation II (pyrrolidine pathway) (3/11 steps found)
- superpathway of nicotinate degradation (1/18 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 5.2.1.1
Use Curated BLAST to search for 4.1.1.76 or 5.2.1.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (261 amino acids)
>MPMX19_06830 Maleate isomerase (Azospirillum sp. SherDot2) MPSLPILRSPTALDFDDRPVEKRVGLVVLATDHTTEPDFRRMVASDRIGIYTARIAYANP TTPENLRRMQPRLAEGAALILPDEPLAAICYSCTSASVVMGDDAIEQAIASAKPGVPVIT PPAAARHGLTAFGAQRIAVLTPYTEQTSRPMAAYFGVHGFDIARFTCFGLDDDREMARIA PASLVRAAVEAMPPDADALFISCTALRSAGVAAEIEDAIGRPVVTSNQATAWATLRLCGD DRPRPEGGRLMTLPLPQDAWS