Protein Info for MPMX19_06825 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR02995: ectoine/hydroxyectoine ABC transporter solute-binding protein EhuB" amino acids 13 to 278 (266 residues), 403.5 bits, see alignment E=2.1e-125 PF00497: SBP_bac_3" amino acids 40 to 262 (223 residues), 94.6 bits, see alignment E=2.2e-31

Best Hits

KEGG orthology group: K02030, polar amino acid transport system substrate-binding protein (inferred from 82% identity to ret:RHE_PF00186)

Predicted SEED Role

"amino acid ABC transporter, periplasmic amino acid-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (282 amino acids)

>MPMX19_06825 hypothetical protein (Azospirillum sp. SherDot2)
MKHLKIAKGFGIAAATLLTLAAPAFAADTLETLREQGFARIGIANEPPYTAVKPDGTVSG
AAPDVARAVMKKLGVNDVVASISEYGAMIPGLQARRFDAVTAGLFMKPERCKAVAYSEPI
LCDAESFALKKGNPLKLTSYEDIAKNPNAKIGAPGGGTEEKLALQAGVPRDRVIVVPDPQ
SGMKMLQDGRIDVYSLPVLSIHDLVGKANDPNIEVVAPVKGAPVYCDGAAFRKQDTALRD
AFDKVLAEMKASGEFARIIEPYGFSAEAAKQTSREKLCAASN