Protein Info for MPMX19_06793 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 TIGR02337: homoprotocatechuate degradation operon regulator, HpaR" amino acids 30 to 158 (129 residues), 142.3 bits, see alignment E=3.7e-46 PF12802: MarR_2" amino acids 53 to 112 (60 residues), 40.6 bits, see alignment E=4.8e-14 PF01047: MarR" amino acids 55 to 111 (57 residues), 39.8 bits, see alignment E=6.6e-14 PF01638: HxlR" amino acids 60 to 129 (70 residues), 22.1 bits, see alignment E=2.2e-08

Best Hits

KEGG orthology group: None (inferred from 58% identity to mag:amb0815)

Predicted SEED Role

"Homoprotocatechuate degradative operon repressor" in subsystem 4-Hydroxyphenylacetic acid catabolic pathway or Aromatic amino acid degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (172 amino acids)

>MPMX19_06793 hypothetical protein (Azospirillum sp. SherDot2)
MGRPSRKAAAAEPIEVAGQSAGEMRAFRRSLPMALLKAREAVMARFRPLLHEHDLTEQQW
RVLRALTTADEFRAGELARVSSISMPSLSRILRTLEKRALIQRGIEDKDLRAAQISITPF
GRDMIALIAPHSERRYAEITAAFGADRLATLYGLLDELADCLGGADGDGDEE