Protein Info for MPMX19_06758 in Azospirillum sp. SherDot2

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 43 to 61 (19 residues), see Phobius details amino acids 104 to 128 (25 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 230 to 245 (16 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 117 to 286 (170 residues), 108.5 bits, see alignment E=1.8e-35

Best Hits

Swiss-Prot: 34% identical to Y413_METJA: Putative ABC transporter permease protein MJ0413 (MJ0413) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 72% identity to mrd:Mrad2831_1763)

Predicted SEED Role

"Taurine transport system permease protein TauC" in subsystem Taurine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>MPMX19_06758 Putative aliphatic sulfonates transport permease protein SsuC (Azospirillum sp. SherDot2)
MKPTATEQVRSAKSPGAGLAGIPSGMVPLNRLRRRMQGFRSQPVLISMAAILAALALWAA
LTGQGVVKPLFLPKIGTVFQAFLDAVDGRIDGAPLTEHIAMSLVRVVSAFVLAALIGIPV
GLATGLSTTLRAALDPFIEFYRPLPPLAYLPLVIIWFGIGETSKILLIFFACFAPVALAA
RAGVSAAAADQVNAARALGASRWQVVVHVVLPAALPDILVGLRIGMGVGWTTLVAAEMVA
ASTGIGQMVLNASNFLRTDIVLMGIFVIGAFATLFEFGMRWLERRLVPWKGKV