Protein Info for MPMX19_06751 in Azospirillum sp. SherDot2

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 73 to 98 (26 residues), see Phobius details amino acids 111 to 130 (20 residues), see Phobius details amino acids 136 to 154 (19 residues), see Phobius details amino acids 200 to 221 (22 residues), see Phobius details amino acids 227 to 250 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 88 to 257 (170 residues), 95.1 bits, see alignment E=2.3e-31

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 54% identity to mpc:Mar181_2517)

Predicted SEED Role

"Urea carboxylase-related ABC transporter, permease protein" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>MPMX19_06751 Putative aliphatic sulfonates transport permease protein SsuC (Azospirillum sp. SherDot2)
MSTRSLFAPKVDIPRGASLALGTGSVAVLIGFWCLLTYGGFTPPDFLAAPDRVLAAGIKR
IGDLSLFRHIGSSLTVILSGFLLASIPAVPLGILMGSFRAVQAAVEPITGFMRYIPVSAL
IPLLILWIGIGIEQKIMVIFLGTFFQQLILISDVSARVSKDLIDCAYTLGASRRQVVQRI
LFPACMPGVLDNLRVTMGWAWTYLVVAELVAADSGLGYMILNAMRGLFTDVILLGVFTIG
VLGLITDFLFKLLRQRLLSWSADL