Protein Info for MPMX19_06650 in Azospirillum sp. SherDot2

Annotation: Photosystem I assembly protein Ycf3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 996 PF13432: TPR_16" amino acids 28 to 91 (64 residues), 30.9 bits, see alignment 2.8e-10 amino acids 191 to 243 (53 residues), 22.3 bits, see alignment 1.3e-07 amino acids 253 to 314 (62 residues), 26.9 bits, see alignment 4.9e-09 amino acids 324 to 384 (61 residues), 27.4 bits, see alignment 3.4e-09 PF13181: TPR_8" amino acids 248 to 278 (31 residues), 13.5 bits, see alignment (E = 6e-05) amino acids 354 to 379 (26 residues), 14.6 bits, see alignment (E = 2.5e-05) amino acids 421 to 453 (33 residues), 12.2 bits, see alignment (E = 0.00015) PF14559: TPR_19" amino acids 259 to 323 (65 residues), 31.3 bits, see alignment 1.8e-10 amino acids 333 to 380 (48 residues), 25.5 bits, see alignment 1.2e-08 PF13414: TPR_11" amino acids 329 to 367 (39 residues), 29.3 bits, see alignment (E = 4.8e-10) PF13429: TPR_15" amino acids 359 to 470 (112 residues), 30.6 bits, see alignment E=2e-10 PF13489: Methyltransf_23" amino acids 751 to 866 (116 residues), 35.9 bits, see alignment E=5.4e-12 PF13847: Methyltransf_31" amino acids 757 to 856 (100 residues), 51.5 bits, see alignment E=8.3e-17 PF13649: Methyltransf_25" amino acids 757 to 852 (96 residues), 58.5 bits, see alignment E=7.4e-19 PF08242: Methyltransf_12" amino acids 759 to 853 (95 residues), 55.7 bits, see alignment E=5.9e-18 PF08241: Methyltransf_11" amino acids 760 to 854 (95 residues), 53.7 bits, see alignment E=2.2e-17

Best Hits

Predicted SEED Role

"3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)" in subsystem Ubiquinone Biosynthesis (EC 2.1.1.64)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.64

Use Curated BLAST to search for 2.1.1.64

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (996 amino acids)

>MPMX19_06650 Photosystem I assembly protein Ycf3 (Azospirillum sp. SherDot2)
MTTDSAIGTAGLPTGQSGPDHQAAGQRLAQVLDLCRSGRPEEAEGPYRTLCGTPPQDPAA
LLSLADAARILGRPADSVAWAEAAVRRQPDRAEGWSVLALAFIAAGRVDDGYAAAAEALR
RTGHEAAGGAAAVQAHRAQALARLRRGQLAEAAAACDTALRLADGAAQPAQPLRQAQAEA
LGTLALVRMLEGRVEEAEALFRRALSHRPVLPEILGNHASLLARLGRDEEALEQAEQAVA
LRPRLAGTLHLIGTLHHRSGQLESAIAAFHRVLTVDPGHLDARLLLADSLRVAGHWTEAV
TVCRDGLALIADPDDRTRTALLANLGTALQSGGDAAGALEAYGAALRLTPDLPEVHNNLA
RLHQETGNPDAAIEDLRRAAAGRPLPLPLRRTLLSLLIAAGRTAEAETEAFGIARTAPDD
AELCFGIAALFLQGGWRDQALPYVRKAIRLAPDMPRNWIAFVEALRDAGPPASGEGADQG
LRTDLLAALERPEVESAGLSRAIAGVLMASPVLKALAAPEAGPEDDGRTLDGKSLALLAD
GSLAGLAEDALLLAHLRAAPVCDPRLERALTRLRRVLMLALTGPGLPDRPSWRTLCAAIA
EQCFLNEYVFAETDGEFQVLAVLVRAAEAALASGEQPPAVLVALLGAYRPLYRWERAEAL
QALSWPEEIARLLNRQVVEPLAEAAIQAELPELTPISHPVSVGVRAQYEENPYPRWMNTG
LLPEPMPLSRFLHALFPHAALPAAPAWNAPGWEAPEVLVAGCGTGREAVWAASTLKNARV
LAVDLSRRSLAYATRQSRRLGLKTIEFAQADLLELGALGRRFDVIHSVGVLHHMEDPMAG
LRVLRGMMSPHGVMEIGFYSAAARRPILAARQFIAERGHPPTLDGIRHVRRDILALPEDH
PARAVIHSPDFYGTSACRDLLMHVHELHVTLPWLADALAALKLEFLGFRLADPAVAALYR
KRFPEDPAMTSLARWDRLEAEHPMIFGGLYQAWVRG