Protein Info for MPMX19_06633 in Azospirillum sp. SherDot2

Annotation: Lipopolysaccharide assembly protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 652 PF13432: TPR_16" amino acids 37 to 99 (63 residues), 23.7 bits, see alignment E=3.6e-08 amino acids 105 to 148 (44 residues), 30.4 bits, see alignment 2.8e-10 amino acids 140 to 186 (47 residues), 18.4 bits, see alignment 1.6e-06 amino acids 183 to 234 (52 residues), 31.1 bits, see alignment 1.7e-10 PF14559: TPR_19" amino acids 42 to 99 (58 residues), 28 bits, see alignment 1.5e-09 amino acids 111 to 165 (55 residues), 25.3 bits, see alignment 1e-08 amino acids 183 to 238 (56 residues), 30.3 bits, see alignment 2.8e-10 PF13424: TPR_12" amino acids 66 to 129 (64 residues), 31 bits, see alignment E=1.6e-10 PF07719: TPR_2" amino acids 67 to 95 (29 residues), 23.6 bits, see alignment (E = 2.4e-08) amino acids 133 to 165 (33 residues), 27.9 bits, see alignment (E = 1.1e-09) amino acids 201 to 234 (34 residues), 24.3 bits, see alignment (E = 1.5e-08) PF13374: TPR_10" amino acids 69 to 94 (26 residues), 21.6 bits, see alignment (E = 1.1e-07) PF13176: TPR_7" amino acids 70 to 98 (29 residues), 25.6 bits, see alignment (E = 5.8e-09) PF13181: TPR_8" amino acids 104 to 131 (28 residues), 18.9 bits, see alignment (E = 8.6e-07) amino acids 133 to 165 (33 residues), 25.2 bits, see alignment (E = 8.2e-09) amino acids 201 to 233 (33 residues), 21.5 bits, see alignment (E = 1.2e-07) PF13431: TPR_17" amino acids 189 to 221 (33 residues), 30.1 bits, see alignment (E = 2.4e-10) PF13844: Glyco_transf_41" amino acids 283 to 434 (152 residues), 99.2 bits, see alignment E=1.3e-31 amino acids 456 to 632 (177 residues), 82.2 bits, see alignment E=1.7e-26

Best Hits

KEGG orthology group: None (inferred from 67% identity to azl:AZL_f01630)

Predicted SEED Role

"TPR domain protein, putative component of TonB system" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (652 amino acids)

>MPMX19_06633 Lipopolysaccharide assembly protein B (Azospirillum sp. SherDot2)
MKKPSHKQARAKRPAIPAPSPQSTAPAASAGDAGFGRALSLHREGRTAEAEAGYRTVLAA
DAGHTNANNNLAIILRARGDWEEALGCYRRALARNAADPFVHSNHGCLLQDMGRSAEAEE
ALRTAIRLKPEYAEAHFNLANILRNRGDREAAKAAYGEALRLKPDMAAALCNLGDLHKGA
VELARAVECFVAALKADPKSAEAWNNLGETLKEMGRIEEAIGVFQKGLEAHPSHALMHSN
LLLALHYTPAVPPETIFRAHMAWAQRHADPLLPAGSRHANPRDPDRRLRIGYVSPDFCAH
SVAFFAEPLIREHDRGHFEVFCYPASARSDVVTERLKGLSDGWRSLVGVDDARAAALIEQ
DGIDILVDLTGHTANNRLTLFARKPAPVQATWLGYPDTTGMRAIDWRFSDAIAEPPGEAD
RLSAERIVRLPQGFHSYRPPLDVAPPAEPPFHANGHVTFGSFNNTSKVTGEVVRVWSEIL
KRVPGSRLIVKSAQMGDEETRRRYLNTFVQCGIDAGRIELLARIDAANGHLRAYDRIDIG
LDPFPYNGTTTTCEALWMGVPVVTLTGANHVARVGASLLTHCGLTELVASDMEGYIATAV
ALAGDPGRLDRLRRTMRSRLNAAPLTDYKGFARGVEAAYRAMWRDWVARSAA