Protein Info for MPMX19_06615 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 662 PF13432: TPR_16" amino acids 111 to 171 (61 residues), 26.4 bits, see alignment 4.8e-09 amino acids 151 to 204 (54 residues), 24.6 bits, see alignment 1.7e-08 PF14559: TPR_19" amino acids 153 to 200 (48 residues), 26.5 bits, see alignment 3.9e-09 PF13844: Glyco_transf_41" amino acids 248 to 445 (198 residues), 141.5 bits, see alignment E=1.8e-44 amino acids 450 to 637 (188 residues), 164.1 bits, see alignment E=2.5e-51

Best Hits

KEGG orthology group: None (inferred from 59% identity to azl:AZL_f01610)

Predicted SEED Role

"TPR domain protein, putative component of TonB system" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (662 amino acids)

>MPMX19_06615 hypothetical protein (Azospirillum sp. SherDot2)
MTLNEALRLALDHFRTGRAAEAEQVCRAILNAVPGQGEVTQLLGTVVMMQNRPQEAETIL
RQSIAIRPDLSDSHSNLGTVLQSLGRMGESLAAHDRCVQLTPGTPEGYVNRGSTRLALGD
RNGAATDFARALRLRPIDALAAANLGVALREGQRMAEAIRALTRALVIEPGNGEAMLGYA
HALRELSRLGEAETAYARAVTLTPAKTEALCYHLYLKQTLCAWGDYDRLCARVTETIDHD
AGVVIPLATLSIDTTPAQQDRSARLFYDRLVKRPSAPPMPARPESRPDSRLRIAYVSADF
HEHATAYLAAELFELHDRERFEVLAYSYGPDDGSAMRQRLVKSFDRFRDIRSVPLDAVAR
CMADDGVDIMIDLKGYTKQTRLDLLSRRLAPVEVSYLGYPGTIGCPYMDYVIGDRFVTPP
EHQPFYAERLAILPDAYQINDRRRPLPEQVPSRGQCGLPEDGVVFAAFNTAYKISPTMFA
LWMRILKRVPGSVLWLFEANPQAAANLKATAEAQGVAGDRLVFAPPRPLADHIARYRVAD
LALDTLPYTGHTTTSDALWAGCPVVTCLGGSFASRVAASLLNAAGLPDTITRSLAGYEEL
AVALAGDPERRASFRKRLEGGRMTVPLFDSHRFTRNLERAYQVMWALHKAGKPPQGFILP
AG