Protein Info for MPMX19_06583 in Azospirillum sp. SherDot2

Annotation: GTP 3',8-cyclase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF04055: Radical_SAM" amino acids 22 to 160 (139 residues), 69.5 bits, see alignment E=4e-23 PF13186: SPASM" amino acids 229 to 296 (68 residues), 38.9 bits, see alignment E=8.5e-14

Best Hits

KEGG orthology group: None (inferred from 38% identity to cby:CLM_3083)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (329 amino acids)

>MPMX19_06583 GTP 3',8-cyclase (Azospirillum sp. SherDot2)
MSVGTFHGHLSPAFPSQINIDVTEFCNLACIHCPYEAVTKIKGAARRNLSLDLHRKLVDE
IAEFGLPHCRYIRYTGEGEPLLHPQLASMISDASIRTGLPINLTTNGLLLSERWIEALLE
AGVTVFDISLDAASADTYAQIRVKGDYDVAVHNVRTLIARNAAHGKPAKVVVSFVRQSLN
AHEEEIFQSFWTAEAADSVVMRNQHSCAGSIASVAQTMWATAPVPRKPCLYPWERLVVGP
TGRFSYCPADWMHEAEIGTLAENTVREVWQGPAMATLRQAHLSGDFGRHSFCGKCPDWSV
IAWPGTGRSYADLMRDLSPSDAAPIPATG