Protein Info for MPMX19_06535 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 transmembrane" amino acids 22 to 43 (22 residues), see Phobius details amino acids 80 to 112 (33 residues), see Phobius details amino acids 130 to 146 (17 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 213 to 236 (24 residues), see Phobius details amino acids 257 to 277 (21 residues), see Phobius details amino acids 301 to 323 (23 residues), see Phobius details amino acids 358 to 379 (22 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 83 to 152 (70 residues), 51.4 bits, see alignment E=6.6e-18 PF00528: BPD_transp_1" amino acids 259 to 383 (125 residues), 58 bits, see alignment E=5.5e-20

Best Hits

KEGG orthology group: K09970, general L-amino acid transport system permease protein (inferred from 91% identity to azl:AZL_a01060)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>MPMX19_06535 hypothetical protein (Azospirillum sp. SherDot2)
MPPGALRSGPVAAVTLWWGGRSGLQAAILALVLLGGFLLGSNTLANMERFGITPGFAFLG
RPAGFEIGEALLDYRPQDSYALALLVGLLNTVKVAVAGGLIATVLGVLLGVARLSGNALL
SGLVQGYVELIRSTPLLLQLFFWSATFQALPSPRQALNPLPGVFLCNRGIQLPAFADGRA
GGWMLAAVALALALALAGTVLRRRLGRRDAVSGMSVAAAACGLPVALLLASGAPLQVEVP
ELAGFNFSGGTTVSPEFSALLVGLVVNAAAMIAEIVRSGIQAVPGGQWEAARALGLPRRR
IMRLVVLPQAMRVIVPLLTSSYLNLTKNSSLAVAIGFPDLVSVINTSANQTGQVLETMAI
MMGAYLTVNLAVSAAMNLYNRRLAARGAR