Protein Info for MPMX19_06526 in Azospirillum sp. SherDot2

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 46 to 64 (19 residues), see Phobius details amino acids 84 to 104 (21 residues), see Phobius details amino acids 110 to 132 (23 residues), see Phobius details amino acids 143 to 162 (20 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 193 to 218 (26 residues), see Phobius details amino acids 220 to 249 (30 residues), see Phobius details amino acids 262 to 283 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 120 to 289 (170 residues), 72.4 bits, see alignment E=2.1e-24

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 62% identity to rme:Rmet_4332)

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (297 amino acids)

>MPMX19_06526 Putative aliphatic sulfonates transport permease protein SsuC (Azospirillum sp. SherDot2)
MTAATDDVTGNDLSSSRRPVVEAPSDRDAFAKEFRRAHRRGLRRAAWLRALLNVTGILLF
LAVWEAVPRLGTWVNPVLLPPPSAVFDSFVPMLLSGEIAANILASLRRAALGFAIATATG
VTAGLLTARIGLLHHVSEPILHGFRSVPSIALVPLSVLWFGIGEGSKVALVAWGSFFPIW
ITTFIGVRDVPAAYLRSAACLGAGRMATLLLVVLPAALPMILAGLRQGIAVSLILLVAAE
LSGAREGIAYMMSTGHQMFRVDIMLIGLVLLGTFGFIADRLFVALIRRLFPWYTTAS