Protein Info for MPMX19_06499 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 612 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 136 to 164 (29 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details amino acids 236 to 256 (21 residues), see Phobius details amino acids 268 to 289 (22 residues), see Phobius details amino acids 316 to 332 (17 residues), see Phobius details amino acids 344 to 366 (23 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 419 to 438 (20 residues), see Phobius details amino acids 466 to 486 (21 residues), see Phobius details amino acids 517 to 539 (23 residues), see Phobius details amino acids 552 to 578 (27 residues), see Phobius details amino acids 589 to 606 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 13 to 281 (269 residues), 139.1 bits, see alignment E=7.9e-45 amino acids 337 to 600 (264 residues), 152.6 bits, see alignment E=6.3e-49

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein K01998, branched-chain amino acid transport system permease protein (inferred from 97% identity to azl:AZL_a01330)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) / Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (612 amino acids)

>MPMX19_06499 hypothetical protein (Azospirillum sp. SherDot2)
MFPTTLGPWLDYTINGLVIGNIYALLAVGLALIFGVSHLINFAHGSVYMVGAYIGWLCVT
KLNLPLPVTFIVVAAGCGLLGAVIERVGLRPLRNAPRIAPLLATIGLSVVLDQSAQLLFS
PDPRALPTQLPTWRIAIGGGSIGALDLLIAGVGIGSAALLYGFLRFTKLGWAVRATALDR
DAAQQCGVDVDKVNRTVFAIASALGGVSGLLVGMYYNTIDPNMGFQAGLKGIVAQLIGGV
GNVPGAIAGSLLLGLIESYGIALFGTSYRNLFAFVALILILVLRPNGLFARARRLPPEPL
TGTFIAPSRPLVLPRWAVWALAAAALALPLVVQQPYLLQTLGNAWLYALLALSLTLVAGT
VGQVSLGHAGLLAIGAYASSLLALDAGVPVLLAVPLAGLVAAALGTALVYPAFRLRGHYV
SIATLAVGEIVTLVILNWESLTRGPIGVTGIPPLSVAGKPLVSGQWVYWVPLAVLLAFAA
LQSRLLSSHLGRTLRAIREDDVAARSYGVDLNRYKGLAFAVAGFIAGVGGALMAHFYSYI
NHETFPAPVSMLALTMVILGGLGNVAGAVLGAAVLVGLPELFRAAAEYRMLIYGVVLLLL
IRFRPQGLLGTV