Protein Info for MPMX19_06484 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 28 to 49 (22 residues), see Phobius details amino acids 64 to 85 (22 residues), see Phobius details amino acids 97 to 119 (23 residues), see Phobius details amino acids 157 to 180 (24 residues), see Phobius details amino acids 191 to 211 (21 residues), see Phobius details amino acids 217 to 242 (26 residues), see Phobius details amino acids 264 to 290 (27 residues), see Phobius details amino acids 313 to 335 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 168 to 339 (172 residues), 63.8 bits, see alignment E=8.9e-22

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 92% identity to azl:AZL_b02630)

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (350 amino acids)

>MPMX19_06484 hypothetical protein (Azospirillum sp. SherDot2)
MSVNDTAAALPAANGGALPIGGGLPSNLLLRFSAAALLWFAASGVTALWPDAADAQEWER
TGEFASLLVVAAGLLVLAALLAAAIRPAPRSRLESAIASLSASVPWLIALALGVTGWEIL
TAKLNLLPRPFFVPPQALLEVYLDDWPRLLDCFAASLRLLVTGYAVGSVLGVVTGVAIGW
SRAVGYWVHPVLRLIGPLPATAWLPIAFFAFPTSWSASVFLIALASGVPVTVLTWSGVAG
VNSAYYDIARTLGASPRFLVLKVAVPAAMPHVFVGLFMGLGASFAVLVVAEMLGVKSGVG
WYLQWSQGWAAYGNMYAALLVMALLCSGLVTLLFRVRDRLLAWQKGMLKW