Protein Info for MPMX19_06435 in Azospirillum sp. SherDot2

Annotation: Tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 687 PF00589: Phage_integrase" amino acids 370 to 554 (185 residues), 82.2 bits, see alignment E=2e-27

Best Hits

Predicted SEED Role

"possible transposase B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (687 amino acids)

>MPMX19_06435 Tyrosine recombinase XerC (Azospirillum sp. SherDot2)
MRAGPVPAAAMHARDRVAPVFPPRHCDDAEYVAYIHGLPLAPMVKRQRIAIRRRFERFWP
ELADWFAAPMGVRVARLPARHQGDAVRINSYAARSYLYYLALTDRIRLDPPWLLAIGDLR
AVQVAASLGIDLGIELLAAEAAAHGLERFGAKLSLAWAMARIALCFGARGAAAVSDDHVD
ALMAAIREFGARPDVGEFWGSAERFRVSPAKAWVTHLGRLRMILYHRGQAAAEPRKAMPG
YAAPAPPQAAMLALVERWLEVRRLTDNPSTVYHLSVGMRHFLHYLAETVPEVQDFGAVTR
DHAQGFMHRMATEIRPTTGRILAPNTRRDRTGALAQFCRQTAAWGWEGAPPRQLVDRRDY
PRAAERIPRYIPADELARLMVAIRSMTCVYQRAALLVARWSGARRAEVRRLAIDCLDRYP
DGTARLRLPAGKTLRERIVPLHDEAAEAIRVVQALRDGRPDRPCTDEVTGLGVRYLFVMN
GRRLSLHYLFETALQAACREAGLVDARGRGTVSAHRFRHTVGTELAEKGARLHTIMSILG
HQSPAMSMVYARISDPEVLRDYRSVLGPGAVIAGPGVEALRAGRLSDEAVDWLKLNFLKT
ELELGHCLRLPSEGPCECDLYLTCARFVTTPAYVGRLRERRHVEMALVEDARCRGWPREV
DRHRAVVARIEGLLGELGEPIDPPPQG