Protein Info for MPMX19_06393 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 60 to 84 (25 residues), see Phobius details amino acids 89 to 110 (22 residues), see Phobius details amino acids 116 to 132 (17 residues), see Phobius details amino acids 150 to 167 (18 residues), see Phobius details amino acids 184 to 206 (23 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details PF13795: HupE_UreJ_2" amino acids 58 to 209 (152 residues), 183.9 bits, see alignment E=8.1e-59

Best Hits

KEGG orthology group: None (inferred from 72% identity to mea:Mex_p10030)

Predicted SEED Role

"putative ORF1 [Plasmid pTOM9]"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (242 amino acids)

>MPMX19_06393 hypothetical protein (Azospirillum sp. SherDot2)
MIPVLRGGSPCPGAARAALPMLVFAALALAGADALAHGVTQGDKGYIQEISGMNLLPFLY
LGAKHMVTGYDHLLFLFGVVFFLYKLEHVAIYVSLFALGHSTTLLLGVLWDTSVSAYLID
AIIGLSVVYKALDNLGAYRRWFGVQPNTKAATLVFGLFHGFGLATKIREFEIAPDGLIPN
LLSFNVGVEVGQMLALSAILIVMGFWRRTDGFLRHAYTANVAMMTAGFLLIGYQLTGWAV
AA