Protein Info for MPMX19_06390 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 13 to 31 (19 residues), see Phobius details amino acids 54 to 79 (26 residues), see Phobius details amino acids 91 to 109 (19 residues), see Phobius details amino acids 292 to 315 (24 residues), see Phobius details amino acids 326 to 350 (25 residues), see Phobius details amino acids 371 to 392 (22 residues), see Phobius details PF03824: NicO" amino acids 15 to 131 (117 residues), 77.4 bits, see alignment E=1.3e-25 amino acids 227 to 389 (163 residues), 69.7 bits, see alignment E=2.7e-23 PF13386: DsbD_2" amino acids 284 to 359 (76 residues), 28.6 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: K08970, nickel/cobalt exporter (inferred from 61% identity to app:CAP2UW1_2329)

Predicted SEED Role

"Inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (405 amino acids)

>MPMX19_06390 hypothetical protein (Azospirillum sp. SherDot2)
MPEFSALLQQGASNAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAIRGTVTQAVLLGLA
ATVSHTLVVWAVALGGMWIGRGWSAETTEPYFQLASAVLIIAVAMWMAARTWREQRHDGH
DHSHGDETHRIDTGHGDVLVLEVFEDGVPPRFRIRSERQGRQAPAPNAATVTVETLRPDG
TLQQFSFLDEGDFLESVEEIPEPHEFVATVRVGHAGHVHEYPVRFTEHAHRHEAASGHHH
HHGHGHEHGHGERDHAPAGALDLGQVGYQDAHERAHARDIQRRFAGRQITTGQIIVFGLT
GGLIPCPAAITVLLLCLQLKEVTLGAALVVCFSIGLALTLVAAGAIAALGMRHAERRWSG
AFSSFARRAPYLSSAVIILVGLYVGIHALQGLGYTLAWIGGNHVS