Protein Info for MPMX19_06382 in Azospirillum sp. SherDot2

Annotation: putative MFS-type transporter YfcJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 30 to 53 (24 residues), see Phobius details amino acids 79 to 103 (25 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 167 to 187 (21 residues), see Phobius details amino acids 208 to 228 (21 residues), see Phobius details amino acids 248 to 267 (20 residues), see Phobius details amino acids 279 to 298 (20 residues), see Phobius details amino acids 304 to 326 (23 residues), see Phobius details amino acids 338 to 361 (24 residues), see Phobius details amino acids 368 to 387 (20 residues), see Phobius details PF07690: MFS_1" amino acids 14 to 228 (215 residues), 93.3 bits, see alignment E=2.3e-30 amino acids 237 to 387 (151 residues), 51 bits, see alignment E=1.7e-17 PF00083: Sugar_tr" amino acids 42 to 185 (144 residues), 39.8 bits, see alignment E=4.1e-14 amino acids 220 to 382 (163 residues), 35 bits, see alignment E=1.2e-12

Best Hits

KEGG orthology group: None (inferred from 64% identity to mag:amb1204)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>MPMX19_06382 putative MFS-type transporter YfcJ (Azospirillum sp. SherDot2)
MSLRSIPSSVVALGFVSLFMDVSSEMIHSLLPVFLVSVLGASALSVGFIEGIAEATASIT
KVFSGVVSDWAGRRKPLLLLGYGMAALTKPVFPLADTLASVLLARFLDRIGKGVRGAPRD
ALVAEVTPPDLRGAAFGLRQSMDTVGAFAGPALAMLLMVLSGDNFRLVFWIAVVPAFVAV
AVILFGVREPDREPSGEPRRFPIRRGQLRRLDATFWGVVMLASLLTLARFSEAFLLLRAQ
SVGVEDAYAPLVLIVMNFVYAISAYPLGRLADRLDRRNLLAMGVGLLVLADLVLASAGSA
PVVLAGAALWGLHMGATQGLLAVFVADATPADLRGTGFGLYNLLTGIVLLAASTVAGVLW
TAVGSGATFLAGAAFALIALVGLLTIVPRRARA