Protein Info for MPMX19_06245 in Azospirillum sp. SherDot2
Annotation: Nucleoid occlusion protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K03497, chromosome partitioning protein, ParB family (inferred from 92% identity to azl:AZL_e04140)Predicted SEED Role
"Chromosome (plasmid) partitioning protein ParB" in subsystem Bacterial Cytoskeleton or Plasmid replication or Two cell division clusters relating to chromosome partitioning
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (305 amino acids)
>MPMX19_06245 Nucleoid occlusion protein (Azospirillum sp. SherDot2) MSRKFERKTRELLGTAAEPAGAAMGGMAGGLTVGSDRLFGTSAGFPHVVELDLARVHRNP DQPRRHFDEAELRGLASSIERHGLQNPVLVRPLPQGEYLLIGGERRVRAHEMLGRKTVFA ILTSGDPDEIGLIDNVQRVDLNAVEYAAALARLIDKHGYTHDELAAVVGRDRTDVTKLLA IMGLPAEIREEYATGFAHVSRSVMIEIAAAPAGLQAGLWKRAKEGASVKAVRQAKRDHAQ GGAADDAPAQEPDAKEAVRALQASVKRILRDVAVVREQRRHLDPDNRDRLLRLRAEIDAI LDEGV