Protein Info for MPMX19_06226 in Azospirillum sp. SherDot2

Annotation: Xylose transport system permease protein XylH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 27 to 44 (18 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 111 to 130 (20 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 186 to 208 (23 residues), see Phobius details amino acids 220 to 241 (22 residues), see Phobius details amino acids 247 to 264 (18 residues), see Phobius details amino acids 294 to 315 (22 residues), see Phobius details amino acids 327 to 346 (20 residues), see Phobius details amino acids 350 to 373 (24 residues), see Phobius details amino acids 378 to 394 (17 residues), see Phobius details PF02653: BPD_transp_2" amino acids 55 to 389 (335 residues), 149 bits, see alignment E=7.9e-48

Best Hits

KEGG orthology group: K10547, putative multiple sugar transport system permease protein (inferred from 98% identity to azl:AZL_e03680)

Predicted SEED Role

"L-arabinose transport system permease protein (TC 3.A.1.2.2)" in subsystem L-Arabinose utilization (TC 3.A.1.2.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>MPMX19_06226 Xylose transport system permease protein XylH (Azospirillum sp. SherDot2)
MSAELNLPAAPPRQASMAKFLKSHMRDYGMLISLLAIVAFFQYMTNGTLLQPLNLTNLVL
QNSYIVIMALGMLLVIVAGHIDLSVGSIVGFIGALAAILMVQFHWHFIPTAIVSLLAGAA
IGAAQGYWVAYFRIPSFIVTLAGMLVFRGLSLALLAGQSVGPFPVEFQRLSSGFIPDIFG
TEGFHTTTMVLCLATPAILIAFSVAARLRRHRFAIEQEPLVLFLLKSAGLFAVVAYVGWL
LSTYKGLPNVLIIMALLIGIYAFVTRDTTIGRRIYALGGNEKAAKLSGIDTRRLSFYTFV
NMGVLAALAGLIFAARLNTATPKAGVSFELDVIAACFIGGASASGGVGRVTGAVIGAFIM
GVMNNGMSIVGIGIDWQQVIKGLVLLAAVCFDVYNKGKA