Protein Info for MPMX19_06223 in Azospirillum sp. SherDot2
Annotation: HTH-type transcriptional regulator GbpR
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 80% identical to GBPR_AZOBR: HTH-type transcriptional regulator GbpR (gbpR) from Azospirillum brasilense
KEGG orthology group: None (inferred from 92% identity to azl:AZL_e03650)Predicted SEED Role
"Fructose-bisphosphate aldolase class II (EC 4.1.2.13)" in subsystem Calvin-Benson cycle or Glycolysis and Gluconeogenesis (EC 4.1.2.13)
MetaCyc Pathways
- superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass (23/26 steps found)
- homolactic fermentation (12/12 steps found)
- superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle (19/22 steps found)
- glycolysis III (from glucose) (11/11 steps found)
- superpathway of glycolysis and the Entner-Doudoroff pathway (15/17 steps found)
- Calvin-Benson-Bassham cycle (12/13 steps found)
- hexitol fermentation to lactate, formate, ethanol and acetate (16/19 steps found)
- superpathway of anaerobic sucrose degradation (16/19 steps found)
- glycolysis II (from fructose 6-phosphate) (10/11 steps found)
- ethene biosynthesis V (engineered) (20/25 steps found)
- glycolysis I (from glucose 6-phosphate) (11/13 steps found)
- 1-butanol autotrophic biosynthesis (engineered) (21/27 steps found)
- formaldehyde assimilation III (dihydroxyacetone cycle) (10/12 steps found)
- gluconeogenesis III (10/12 steps found)
- photosynthetic 3-hydroxybutanoate biosynthesis (engineered) (20/26 steps found)
- superpathway of N-acetylneuraminate degradation (17/22 steps found)
- glycolysis IV (8/10 steps found)
- oxygenic photosynthesis (13/17 steps found)
- pentose phosphate pathway (non-oxidative branch) II (5/6 steps found)
- gluconeogenesis I (10/13 steps found)
- sedoheptulose bisphosphate bypass (2/2 steps found)
- formaldehyde assimilation II (assimilatory RuMP Cycle) (7/9 steps found)
- sucrose biosynthesis I (from photosynthesis) (7/9 steps found)
- glycolysis VI (from fructose) (8/11 steps found)
- superpathway of hexitol degradation (bacteria) (12/18 steps found)
- glycolysis V (Pyrococcus) (6/10 steps found)
- 1,3-propanediol biosynthesis (engineered) (5/9 steps found)
- sucrose degradation V (sucrose α-glucosidase) (2/5 steps found)
- gluconeogenesis II (Methanobacterium thermoautotrophicum) (11/18 steps found)
- Methanobacterium thermoautotrophicum biosynthetic metabolism (21/56 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from terpenoid and polyketide
- Biosynthesis of phenylpropanoids
- Biosynthesis of plant hormones
- Biosynthesis of terpenoids and steroids
- Carbon fixation in photosynthetic organisms
- Fructose and mannose metabolism
- Glycolysis / Gluconeogenesis
- Pentose phosphate pathway
Isozymes
Compare fitness of predicted isozymes for: 4.1.2.13
Use Curated BLAST to search for 4.1.2.13
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (330 amino acids)
>MPMX19_06223 HTH-type transcriptional regulator GbpR (Azospirillum sp. SherDot2) MTPQRFPPNWFQKARLKLRHLQLFAALDEHRNLHRAAASLNMSQPAASKLLGDLEETLGI ELFDRHGRGIEPNWYGSLMIRHARMILSELQETGEELNALLAGHSGRVSIGTVMAPAVEL VVPVISSLTRDHPNLKVAVAVETSDVLADRVHQGVMDFAIGRLPGHYDPTAFEYQEISSE ELCFICHDTNPLLRLGRPLTAADLSDATWILQPVGTLLRDRVEALFRAEGARLPHRVIES ASPVISMAMVAETESITVFARALAQVFSPSGCCAIMPFHKRFSVEPYGIFWLKDRPLSPG ARTVLSAVRAASELKMRLVAASPAATAAAR