Protein Info for MPMX19_06215 in Azospirillum sp. SherDot2

Annotation: Inner membrane ABC transporter permease protein YjfF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 41 to 61 (21 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 120 to 139 (20 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 241 to 241 (1 residues), see Phobius details amino acids 265 to 287 (23 residues), see Phobius details amino acids 297 to 319 (23 residues), see Phobius details PF02653: BPD_transp_2" amino acids 38 to 306 (269 residues), 127 bits, see alignment E=3.9e-41

Best Hits

Swiss-Prot: 60% identical to YJFF_ECOLI: Inner membrane ABC transporter permease protein YjfF (yjfF) from Escherichia coli (strain K12)

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 98% identity to azl:AZL_e03570)

MetaCyc: 60% identical to galactofuranose ABC transporter putative membrane subunit YjtF (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-491 [EC: 7.5.2.9]; 7.5.2.9 [EC: 7.5.2.9]

Predicted SEED Role

"Putative sugar ABC transport system, permease protein YjfF"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>MPMX19_06215 Inner membrane ABC transporter permease protein YjfF (Azospirillum sp. SherDot2)
MTGALQRFLPLIVTTAVLVVGFLICAAQFPNFASWRVVANLLTDNAFLGITAVGMTFVIL
SGGIDLSVGAVIGFTTVLLAVLIEHGGWHPVPAFAVALIAAGGFGAAMGGVIHVFQMPPF
IVTLAGMFIARGLGFVLTTDSVPINHPLYGELNDMALRFDFGLKLSLPALLMLGVVVAAV
VLAHWTRFGANLYALGGNRQSAELMGVPVARTTVAVYGLSGLLAGLAGIVFSLYTGAGYS
LAATGVELDTITAVVIGGTQLTGGYGYVVGTFVGVLIQGLIQTYITFDGTLSSWWTKIAI
GVLLFVFILLQKGLLVVWAGRGGEPAEA