Protein Info for MPMX19_06188 in Azospirillum sp. SherDot2

Annotation: Flagellar biosynthesis protein FlhA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 697 transmembrane" amino acids 23 to 42 (20 residues), see Phobius details amino acids 48 to 67 (20 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 119 to 142 (24 residues), see Phobius details amino acids 211 to 231 (21 residues), see Phobius details amino acids 252 to 270 (19 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details amino acids 312 to 329 (18 residues), see Phobius details TIGR01398: flagellar biosynthesis protein FlhA" amino acids 22 to 697 (676 residues), 874.6 bits, see alignment E=2.2e-267 PF00771: FHIPEP" amino acids 33 to 688 (656 residues), 830.2 bits, see alignment E=6.8e-254

Best Hits

Swiss-Prot: 49% identical to FLHA_CAUVC: Flagellar biosynthesis protein FlhA (flhA) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K02400, flagellar biosynthesis protein FlhA (inferred from 97% identity to azl:AZL_e01210)

Predicted SEED Role

"Flagellar biosynthesis protein FlhA" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (697 amino acids)

>MPMX19_06188 Flagellar biosynthesis protein FlhA (Azospirillum sp. SherDot2)
MTLTDHVRSRFGLIGDIGLANRDVLFAVGILLVLAVLFLPVPSWFLDLGLALSFSVAVLV
LMVSLWIPRPLDFSSFPTVLLVVTMLRLALNIASTRLILSEGHNGHAAAGHVIQGFSQFV
MGGNFVIGVVIFCILVVINFVVITKGATRIAEVGARFTLDAIPGKQMAIDADLSAGMIDE
AEARRRRKELEDESTFYGAMDGASKFVRGDAVAGLVITVINVLGGMAIGIAQKGMSFEHA
ASIYTTLTVGDGLATQIPALVVSLAAGLLVTKGGNVGSAEKAVIDQLGAYPKALLVASGL
LVSLALTPGLPMAPFLAIGAAFALLGWYAPRRKARAAALAKLEESRKAPAAVPEEAVEDM
LKVDEVKVEVGNHLVPLILNKNGPLTTKVKTLRKRFATEFGFVLPSVRIKDSSFLAPKSY
VISIMGVEAAKGEVRPKHLLAIDPTGGAVPDIAGDATREPTFGLQAKWIDPARHEEAVAK
GYTVVDPESVITTHLTEVIKDNLSTLLTFAALQKLIDGLGREYQKLINDMVPSQISLVVL
QRVLQQLLSERVSIRNLPAIVEAVAEAVGWTRHITLITEHVRMRLGQQIHQGLAGPDGFV
SVIALSPRWEQALLDNIVVEGDDRRFVMPPSQVQEFLTAVRLKIQKHATSQIWPALLVGA
EARPFVRSLLERVSPMTPVLSHAELHRKAALKTVDQV