Protein Info for MPMX19_06187 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 transmembrane" amino acids 16 to 36 (21 residues), see Phobius details amino acids 45 to 64 (20 residues), see Phobius details amino acids 85 to 111 (27 residues), see Phobius details amino acids 122 to 152 (31 residues), see Phobius details amino acids 185 to 209 (25 residues), see Phobius details amino acids 221 to 253 (33 residues), see Phobius details PF01311: Bac_export_1" amino acids 19 to 248 (230 residues), 149.9 bits, see alignment E=4.4e-48

Best Hits

KEGG orthology group: K02421, flagellar biosynthetic protein FliR (inferred from 93% identity to azl:AZL_e01220)

Predicted SEED Role

"Flagellar biosynthesis protein FliR" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>MPMX19_06187 hypothetical protein (Azospirillum sp. SherDot2)
MDAPVDGLSQFLTLEIYRGLLVLARVAAAIGLLPGFGEAAVPMRVRAALAVIVTLVLLPG
VEGLPDRMPDQPVEMLRALAGETLVGAYLGLGARLFMAALQTAGAVAAQVVGLSNPFSMA
AAGFEGGSVLSGVLLIGGLALLFASDVHYLMIGALARSYGSWPAGVFPDLGMVAQRFAEL
LASTFRLGVGLAAPFILYGLVVNLALGLVNRVMPAMPVYFVATPGVLMIGMGLFMATAGA
MLTAFVAALGGWLSGS