Protein Info for MPMX19_06179 in Azospirillum sp. SherDot2

Annotation: putative SURF1-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details PF02104: SURF1" amino acids 35 to 240 (206 residues), 193.6 bits, see alignment E=2.6e-61

Best Hits

KEGG orthology group: K14998, surfeit locus 1 family protein (inferred from 85% identity to azl:AZL_e01290)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (261 amino acids)

>MPMX19_06179 putative SURF1-like protein (Azospirillum sp. SherDot2)
MTGLPSAPPAGGSSVKRARPAWALALFGLLALAGIAGLTALGIWQLERRVWKLDLIERVD
ARIHASPVPAPGPEAWASVGAASDEYRRVAVTGRFLNDRETLVQAVSDLGGGFWVMTPLV
TDRGFTVLVNRGFVPPDRRDPATRADGQPHGQQGGEVTVTGLLRLTEPKGGFLRSNDPAA
GRWYSRDVAAIAAATGLEQAAPYFIDADSTRNPGGWPVGGLTVVSFPNSHLGYALTWFAL
DLMLIGAVLFVIRSEMRRRRA