Protein Info for MPMX19_06098 in Azospirillum sp. SherDot2

Annotation: Transcriptional regulatory protein TyrR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 PF00989: PAS" amino acids 80 to 131 (52 residues), 27.4 bits, see alignment 8.6e-10 PF00158: Sigma54_activat" amino acids 199 to 366 (168 residues), 224.8 bits, see alignment E=1.7e-70 PF14532: Sigma54_activ_2" amino acids 200 to 371 (172 residues), 77.5 bits, see alignment E=3.7e-25 PF07728: AAA_5" amino acids 222 to 342 (121 residues), 23.6 bits, see alignment E=1.3e-08 PF18024: HTH_50" amino acids 460 to 506 (47 residues), 54.9 bits, see alignment 1.7e-18 TIGR04381: TyrR family helix-turn-helix domain" amino acids 461 to 507 (47 residues), 76.7 bits, see alignment 5.1e-26

Best Hits

KEGG orthology group: None (inferred from 92% identity to azl:AZL_e03890)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (509 amino acids)

>MPMX19_06098 Transcriptional regulatory protein TyrR (Azospirillum sp. SherDot2)
MRIEVTFTDRVGIAHEILAVLALRRLNVVGVEVDPPLIHIDAPGLDPAALPALSDALRGI
VGVRSVAAIDMLPGTRRRLHLDALLAALPDPVLAVDRTARVVVASAAAAQVAGLPEARLA
GLDLGELFGEPGLRDELTAGGFRMSGREVTLNGQPFLLEVTPIVDVEAAGAVITLFTPSR
LGERLDAIQNFDEGGFDRILGESPPIRALKARAARVAAMEAPLLILGETGTGKELIAHAC
HRASPRRDKPFLALNCAAVPENLAESELFGYAPGSFTGAQRGGKPGLLELAHGGTVFLDE
IGEMSAYLQAKLLRFLNDGSFRRVGGEREQKVDVRVISATHRSLEAMVADHSFREDLFYR
LNVLTLDVPPLRERGQDILLLARHFIARAAAQARRPPGRLTPAAAAALLANRWPGNVRQL
ENVIFRAMTMSDGGTLDAADLELAGAGMQAAEVPAEDAGSWEDAVDGFERTLLRRLYPRF
PSSRKLAARLSTSHTMIANKLRKYGIPER