Protein Info for MPMX19_06091 in Azospirillum sp. SherDot2

Annotation: Glycolate permease GlcA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 558 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 41 to 62 (22 residues), see Phobius details amino acids 69 to 92 (24 residues), see Phobius details amino acids 115 to 134 (20 residues), see Phobius details amino acids 140 to 161 (22 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 197 to 215 (19 residues), see Phobius details amino acids 222 to 240 (19 residues), see Phobius details amino acids 246 to 265 (20 residues), see Phobius details amino acids 310 to 327 (18 residues), see Phobius details amino acids 371 to 392 (22 residues), see Phobius details amino acids 404 to 423 (20 residues), see Phobius details amino acids 443 to 461 (19 residues), see Phobius details amino acids 526 to 549 (24 residues), see Phobius details TIGR00795: transporter, lactate permease (LctP) family" amino acids 5 to 547 (543 residues), 539.4 bits, see alignment E=5.3e-166 PF02652: Lactate_perm" amino acids 15 to 543 (529 residues), 542.3 bits, see alignment E=6.9e-167

Best Hits

KEGG orthology group: K03303, lactate transporter, LctP family (inferred from 97% identity to azl:AZL_e03830)

Predicted SEED Role

"L-lactate permease" in subsystem Lactate utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (558 amino acids)

>MPMX19_06091 Glycolate permease GlcA (Azospirillum sp. SherDot2)
MSWSQVYDPMNNIWLSTLFASLPVLVMLGGLGIFHMKAHRAALLGLATALAVAIVVFGMP
VAMAGKTALLGAAYGLLPIGWIVVNIIFLYHLTEQRGQFKILQESITGITNDRRLQLLLI
AFCFGAFFEGAAGFGTPVAVTGAMLIGLGFTPLAASGLSLIANTAPVAYGALGTPVLALA
AVTGLPLLDLSAMIGRQLPFFSVLVPFWLIVAFAGWRGMIQIWPAILVAGVSFAVPQYLV
SNYHGPWLVDVAAAIVSLVCVTLFLKVWHPKAIWHTAGGASAMTQSAGAAVVQGEARRSH
GYSGAEVRRAWMPWAILSVLVFLWGIPEVKAFLDGVSIFKFPIDGLHNMVMRVPPVVAKA
HPEAAVYTLNWLSATGTGIFIAAVISGFLMGYSPVEMVKTYGRTLYAIRNSLLTISAMLA
LGYTTRYSGLDTTLGLAFANSGFLYPFFGTFLGWLGVALTGSDTASNVLFGSLQKVSSEQ
LGLPPTLMAAANSSGGVMGKMIDAQSIVVAAVATKWHGHEGKILRFVIWHSLALTALVGL
LVMAQAYLWPFTLMVIGR