Protein Info for MPMX19_06088 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1265 PF01590: GAF" amino acids 39 to 162 (124 residues), 60.5 bits, see alignment E=1.6e-19 PF13185: GAF_2" amino acids 40 to 162 (123 residues), 34.7 bits, see alignment E=1.2e-11 TIGR00229: PAS domain S-box protein" amino acids 198 to 310 (113 residues), 24.6 bits, see alignment E=1.1e-09 amino acids 312 to 439 (128 residues), 40.5 bits, see alignment E=1.4e-14 PF08447: PAS_3" amino acids 211 to 297 (87 residues), 52.2 bits, see alignment 3.8e-17 amino acids 340 to 425 (86 residues), 48.2 bits, see alignment 6.7e-16 PF13426: PAS_9" amino acids 211 to 302 (92 residues), 14.1 bits, see alignment 2.9e-05 amino acids 338 to 430 (93 residues), 15.6 bits, see alignment 9.9e-06 PF08448: PAS_4" amino acids 239 to 305 (67 residues), 24.7 bits, see alignment 1.4e-08 PF00989: PAS" amino acids 317 to 429 (113 residues), 26.5 bits, see alignment E=3.3e-09 PF12860: PAS_7" amino acids 450 to 566 (117 residues), 78.9 bits, see alignment E=2.1e-25 PF00512: HisKA" amino acids 603 to 668 (66 residues), 80.6 bits, see alignment 4.1e-26 PF02518: HATPase_c" amino acids 715 to 830 (116 residues), 103.3 bits, see alignment E=6.5e-33 PF00072: Response_reg" amino acids 995 to 1107 (113 residues), 90.2 bits, see alignment E=5.9e-29 PF01627: Hpt" amino acids 1167 to 1251 (85 residues), 36.4 bits, see alignment 3e-12

Best Hits

KEGG orthology group: None (inferred from 86% identity to azl:AZL_e03800)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1265 amino acids)

>MPMX19_06088 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MSADPVEGPVPAALPPDESGRLAVLHSYCILDTPPEPGFDNITRLARHFFRTRIALVSLI
DRDRQWFKSRAGLEATETHRDFAFCAHAILDDGVLVVADATRDRRFAGNPLVTGDPHIRF
YAGAPLVADGRKLGTLCVIDDRPRGGFDAREAETLAQLARLVVDEMTLRREVARRELAEA
ELRDRSRLLNLAEEIGQFGHWYVDFVTDIRRWSDEVYRILGLPPQQQQPTVELSRACYHP
DDRKPLADLVERARKTGEGFSIEARVIRPGGALRHVFIRGMAECGDDGRPVGLLGVVQDI
TDAKREEAELRSNRELLDLTVQATRDGIWDWNLEGGGIWFSPTWKEQLGYRDGELENSLD
MWAGLIFEEDRIAALEMVRAYNAGLIPKFEAVQRFRHKQGHTVYILSRAIHIRDAEGRVV
RMVGAHTDITRDKLTEEELRLAKQTLDDAIEAVPEGLAYFDADDRLILCNERYREAHPLT
APLMVPGRPFEDILRAAVANGEFAGNPDGPNDETWIQAELAQHRNPGAPFERELPDGRWI
VVAENRTSNGSLVCTRTDITERKRFEAELQRQAADMCALAEGLDAAREEADALRARAEAA
TQAKSEFLAAMSHEIRTPMNGIQGMTELLFDTPLTDEQRQFAQAIRSSSNALLTIINDIL
DISKLEAGRVTIETLPFDAADLVEGVVELLTPRAHEKGIEIGFYIDPLLRRTLLGDPTRI
RQILVNLVGNAVKFTDRGSVAVELEVLDATDAHLVLRITVTDTGIGIPAEAMPTLFNKFQ
QVDGSITRKFGGTGLGLAICRQLSELMGGSIAVESSLGIGSRFLVDLPLALSEEALPPAE
QPLAGRSVLVVDDLAVNRRVLASMLDSLGAWPTCVESGPDALEALRRGAAGGRPFDVVLA
DQTMPGMGGDTLLATVAGDPALIGTRRVLIVTLGPAVRGESGPAPGLAHATLNRPLRQSS
LAACLTGLFAAAAPAASAVPSAEAKVEDVLRRGRILLAEDNRTNQLFATTLLRRLGYTVE
VAEDGEQAVAAACRGGLDLVLMDVQMPGMDGLEAAQAIRARGGALAGLPIIALTADAMPG
TRELCLRAGMSDYLTKPISRAGLLSALDRWIGTAEPPAAAAEAGGGSGKGSAAVNDDGSG
EDGEALDEAVLDDLVETVGADSLALIVDSFLEDVSHRLERLSAMDDAMPAGTVDLRALAQ
EAHDLSSLAGSFGGMAVMHIAWRMEVLCRNGDRDQAARLLPVLLREAARLERSLRERTGV
PRPVA