Protein Info for MPMX19_06077 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1153 transmembrane" amino acids 10 to 32 (23 residues), see Phobius details amino acids 303 to 325 (23 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 381 to 503 (123 residues), 29.8 bits, see alignment E=2.9e-11 amino acids 506 to 628 (123 residues), 30.8 bits, see alignment E=1.3e-11 PF13188: PAS_8" amino acids 387 to 440 (54 residues), 27.6 bits, see alignment 8.5e-10 amino acids 510 to 559 (50 residues), 19.7 bits, see alignment (E = 2.5e-07) PF13426: PAS_9" amino acids 399 to 495 (97 residues), 30.9 bits, see alignment E=1.1e-10 amino acids 523 to 620 (98 residues), 25.9 bits, see alignment E=4.1e-09 PF00989: PAS" amino acids 510 to 618 (109 residues), 29.6 bits, see alignment E=2.5e-10 PF08448: PAS_4" amino acids 516 to 623 (108 residues), 28.9 bits, see alignment E=4.7e-10 PF00512: HisKA" amino acids 641 to 706 (66 residues), 60.5 bits, see alignment 5.3e-20 PF02518: HATPase_c" amino acids 754 to 870 (117 residues), 87.9 bits, see alignment E=2.6e-28 PF00072: Response_reg" amino acids 897 to 1008 (112 residues), 74.8 bits, see alignment E=2.4e-24 PF01627: Hpt" amino acids 1064 to 1135 (72 residues), 26.8 bits, see alignment 2e-09

Best Hits

KEGG orthology group: None (inferred from 90% identity to azl:AZL_e03710)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1153 amino acids)

>MPMX19_06077 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MVRIGVGARLFGALAFNGLVAFLIGLGAYIAFDGLHAGITKVTSEQFPAVVASAKLERQH
QRIMRTLEQLALSQENFGRETIKQGLADQLDGYDRLLAEMDSSDGRQTQRITGLKSQRDE
ILRLRDAIDRGVTARITARRALAERNRDVRRMADALAEPALRGVEDAGVQRWLAMAERLL
FLIASVHQAENSFALTRLADSAVAQLSALDGSAPVGPADGSGDNVADRLARLAEGMRSVV
EGDRSVFRQRQAELQASEMLNGLVDRANQVSLVNTGLNTGIFVEQTKAAEESRQQVIEVS
TTYTRLFFASVGVVVLGMVLSVLYVRRKVLARLWAVSEAIRDRTGGGRAEVPVTGADEIG
ELARALRFYIQETEDKSEALRRNEQWLRTVLEAAPVPLVISGRADGQIRFVNRRAADLFE
VDEAGELLGRPAASVWYVPQVRDEFVRDVFTSGLALDVETELVTRSGRRLWGLLSGIAFE
FQGEEVLLSSVVDITRRREAEELLRRTQAFLDAVIDNVPSVLYVLDGDSGRVLLWNRAAE
DCFGTRRADIEDRTLAEVLGPETGRALAGGDPGSMRSLGVEELVLPRNGENTVFALQRHP
FEWSGDGRCRIICVANDITASRRAREELRQAKERAERADAAKTEFLATVSHEMRTPLNGI
LGLCRLLLTGQLHAGERRYAMSIMRCGHGLLDQVNDILDLRKIEDGKLDLDPTPCALLPV
LEEVVATVEGLANEKGIYLDLDIAPEVPDQVVIDRQRLRQILVNLVGNAVKFTERGGVDL
RVDIEPGPERSGTGEMLRLAVRDTGIGVPADRRAAIFEKLEQADPTIARRFGGSGLGLAI
VRHLLDAMQGSIRVDSVEGLGSVFTVTIPLLRVDEPALPARPGRLLPISRVRSLALLLVE
DDAINREVALGLLSDAGHRITVAETGESALELATRRHFDAILLDIRLPDIDGPEVARRIR
ALEDADRAAVPIVAVTANVFAADRARYIASGIDAVIEKPIFPERLMHLLSNAVAPRDDDE
EPGAGMVPAETSPRPRVVEDDVNEEILERYIRSLGPARFTTIRGLLLESAQEGLPRLSAA
DTPDDEIEDIAHRLAGAASHFGLTAFVGLMRAVEDGMREGRRVEAQELAATAESAFSRGL
AAMDAVRGVLEGV