Protein Info for MPMX19_06063 in Azospirillum sp. SherDot2

Annotation: C4-dicarboxylate TRAP transporter large permease protein DctM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 44 to 65 (22 residues), see Phobius details amino acids 93 to 94 (2 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 168 to 191 (24 residues), see Phobius details amino acids 213 to 233 (21 residues), see Phobius details amino acids 239 to 257 (19 residues), see Phobius details amino acids 266 to 290 (25 residues), see Phobius details amino acids 304 to 328 (25 residues), see Phobius details amino acids 330 to 350 (21 residues), see Phobius details amino acids 356 to 382 (27 residues), see Phobius details amino acids 394 to 418 (25 residues), see Phobius details PF06808: DctM" amino acids 6 to 414 (409 residues), 399.7 bits, see alignment E=7.5e-124 TIGR00786: TRAP transporter, DctM subunit" amino acids 16 to 419 (404 residues), 412.1 bits, see alignment E=1.1e-127

Best Hits

Swiss-Prot: 43% identical to DCTM_PSEAE: C4-dicarboxylate TRAP transporter large permease protein DctM (dctM) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 97% identity to azl:AZL_e02170)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, large permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>MPMX19_06063 C4-dicarboxylate TRAP transporter large permease protein DctM (Azospirillum sp. SherDot2)
MVTALFVTFAVLLILGAPVGIALGGASAVYLVGSDIDLAVVPQFMYAGMDSFVLLCIPGF
VLAGNLMNGGGITDQIVLFSNRLVGHIRGGLGLANVTGSMVFAGISGTAVAETASIGAVM
IPAMRKSGYDAPFAAAVTAAASTVGPIIPPSVPMIIVGTLTGLSVGKMFMAGAIPGLLLG
IGMMLTVWILARARNYPREPWQGFGALVRASRGAFWALLMTAIILFGIVGGYFTPTEASI
VAALYAFVIGLFVYKGFKLRQLPGILLESAIGAGGLILLVGLANVFGWILTSEQIPQAIA
SSMLALTTNKYLIILLINILLLIVGTFMETIAALIILFPPLLAVATQVGIDPIHFATFAV
LNLMIGLTTPPVGVCLFVAANIAKISLGAITKAIWPFLLCNILILFLVSYIPALSLWLPS
LLFR