Protein Info for MPMX19_06057 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 69 to 93 (25 residues), see Phobius details amino acids 105 to 127 (23 residues), see Phobius details amino acids 136 to 159 (24 residues), see Phobius details amino acids 172 to 215 (44 residues), see Phobius details amino acids 220 to 238 (19 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 86 to 259 (174 residues), 38.8 bits, see alignment E=4.2e-14

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 96% identity to azl:AZL_e02230)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (277 amino acids)

>MPMX19_06057 hypothetical protein (Azospirillum sp. SherDot2)
MQKSIMSRLWVFAVWAVIGLFLINLLGLIASVVTSSVATRWLGTWLPVGFTTRWYFAAWD
EFQLGDVLWVTFQAVGAVVLLSGLLGVPAAYALARREFPAKRAVMLLLLLPLLVPPITYG
IPLATVLYKAGLGGTLTGVILANLVPTVPFVVLVMIPFIEQIDPRTEAAARVFGANIFQM
FVHVLVPMLMPGVLAALLLVLVRTIGMFELTFLVSGPGSQTLVVALYYAVFASGVRAVQS
IDSMAVIYMVTTLVWLIVALRFVNPTQIVGRGKRPAA