Protein Info for MPMX19_06046 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1311 PF00989: PAS" amino acids 160 to 261 (102 residues), 44.2 bits, see alignment 8.2e-15 amino acids 277 to 392 (116 residues), 56.3 bits, see alignment E=1.4e-18 PF13426: PAS_9" amino acids 161 to 263 (103 residues), 50.9 bits, see alignment E=7.5e-17 amino acids 287 to 394 (108 residues), 34.8 bits, see alignment E=7.4e-12 amino acids 431 to 524 (94 residues), 22.8 bits, see alignment 4.2e-08 TIGR00229: PAS domain S-box protein" amino acids 161 to 271 (111 residues), 61.2 bits, see alignment E=5.3e-21 amino acids 273 to 398 (126 residues), 60.6 bits, see alignment E=8.2e-21 amino acids 403 to 532 (130 residues), 48.6 bits, see alignment E=4.2e-17 PF08448: PAS_4" amino acids 163 to 266 (104 residues), 44.5 bits, see alignment E=7.5e-15 amino acids 283 to 397 (115 residues), 43.7 bits, see alignment E=1.3e-14 PF13188: PAS_8" amino acids 164 to 198 (35 residues), 15.9 bits, see alignment (E = 4.4e-06) amino acids 277 to 321 (45 residues), 24 bits, see alignment (E = 1.2e-08) PF08447: PAS_3" amino acids 173 to 257 (85 residues), 43.8 bits, see alignment 1.1e-14 amino acids 430 to 519 (90 residues), 73.3 bits, see alignment 7.3e-24 PF00512: HisKA" amino acids 545 to 610 (66 residues), 77.1 bits, see alignment 3.8e-25 PF02518: HATPase_c" amino acids 657 to 770 (114 residues), 105.5 bits, see alignment E=9.5e-34 PF00072: Response_reg" amino acids 792 to 879 (88 residues), 60.2 bits, see alignment 9.3e-20 amino acids 954 to 1065 (112 residues), 91.3 bits, see alignment E=2e-29 PF01627: Hpt" amino acids 1126 to 1203 (78 residues), 39.6 bits, see alignment 2.4e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1311 amino acids)

>MPMX19_06046 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MHRLLQSQFKRVLGLPTAEAADSVLAELKALAGTAGLSAEAARMLETLPALFTRIGQSYE
QADRDLTLRARSLQLSSEELADTNERLRREAAAQAHAIRRLRGIANSLLRADGHPELPDA
ADSSPTDSLERLSQLMAGLVEERSAAQRALEQQKFALDQHAIVSITDHRGIITYANDKFC
QISGFPREELLGRSHRIVNSGHHPSGFFAEMWHTVMDGQVWHGEICNRTKAGEEYWVAAT
IVPQLTADGQPHQYIAIRTDITERKRMEAELEDSRRFLQSITDSMGEGVFSLDRNGFCTF
LNPEAERLLGWSLEELRGITLHDAVHYKDGQGRPVAGKDCTVLNSVRLGEIHRSETDHFV
RRDGTIFPIAITAVPLREDGRIVGSVTVFQDITERQRMLTALQESEERLTVALDASITGL
WDWNPVTDHAYFSDLWLGMLGYAPGELPGRGATWLALLHEGDRDRVLATLEDHVAGRAPV
YEVEFRMRHKSGAWVWILSAGKVTDRDADGLPTRITGIHKDVTDRKRTEDELARAKEEAD
RANRQKSDFLANMSHEIRTPMNAVIGLSHLMMKTELTPRQRDYLDKIHASSRSLLGIIND
ILDFSKVEAGKLTIETIPFHIGDVLQEVATVVLPKVREKGLELIVDLHGGVPGTLVGDPL
RLGQVILNLVSNAVKFTERGEVAVTVGGRIGTADDYRLEVEVCDTGIGMSPEQAAALFRP
FTQADSSTTRRFGGTGLGLAICRQLVELMGGTVSVESRPGEGSIFRFSIRCRVAAGDTTD
DRLPSDLMDRRVLVVDDSDAVRSILTDMLERFGLTVESVGDGLAALRRVEEGQTGIGPPV
ELVVLDWRMPELDGVETLRRLRALPGAQPPVVMTTAYGADGVQGALDCALENNGAAGPDR
PVTAVLEKPVTPSAMFDSVMMALGGAAARPAESARRVHDPAQSTELSALVGRSVLLVEDN
LVNQQVACGLLELVGIEATVVGSGEEALQCLREVKFDLVLMDVQMPGLDGYETTRLIRRK
LELSSLPIVAMTAHAMAGDRERCLDSGMNDHVSKPIDPETLYAALARWLKPVRGLGGGAA
AATGNAAMPAVSAVSAAQALPDSLPALDLAVARRNVNGNLALLRRILIDFAATHEGEAVR
LSTAVCEGRWKDVLRLSHTLKGTAATIGAMELSELAGRVEAGAMTVPPAVEDGLLDRLAD
ALARVVKGIGTLGRPTADITPQPEPTTPAGLPHDMLRAAQSLSDRLGGLLIAGDPEAGDL
ADALARMLAGSPVTALAERVNRHAGAFDFDDASTALTELRDRLRDLRETAT