Protein Info for MPMX19_06038 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 704 PF08497: Radical_SAM_N" amino acids 23 to 342 (320 residues), 456.5 bits, see alignment E=6.3e-141 TIGR03904: uncharacterized radical SAM protein YgiQ" amino acids 23 to 608 (586 residues), 865.6 bits, see alignment E=7.4e-265 PF04055: Radical_SAM" amino acids 343 to 548 (206 residues), 43.9 bits, see alignment E=4.7e-15 PF11842: DUF3362" amino acids 557 to 665 (109 residues), 154.2 bits, see alignment E=4.7e-49

Best Hits

KEGG orthology group: None (inferred from 96% identity to azl:AZL_e02350)

Predicted SEED Role

"Fe-S OXIDOREDUCTASE (1.8.-.-)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (704 amino acids)

>MPMX19_06038 hypothetical protein (Azospirillum sp. SherDot2)
MLAAPNLFAHRPDRSVRPKAAPFLPMSRAEMDRLGWDQCDVIVVTGDAYIDHPSFGMAII
GRLLESQGLRVGIIAQPDWSSAEPFKILGKPRLFWGVTGGNMDSMVNHYTADRRLRHNDS
YTPNDEGGKRPDRAVIVYSQRCREAFKDVPIVLGGIEASLRRIAQYDHWSEKIRRSVLVD
SKADMLVYGNAERAIIEIAQRALNGESPKAMTDIRGTAIMRSSLPDGWTVVDSSSIDDPS
APVSPRAAGADRMAVRLPSFEQVTADKVLYAHASRVLHQESNPGNARALVQRHGDRDVWL
NPPPIPLETNEMDGVYDLSYARAPHPSYGDARIPAWEMIRFSVNIMRGCFGGCSFCSITE
HEGRIIQSRSEGSILREIEHIRDKTKGFTGVISDMGGPTANMYRLACKDKETESVCRRPS
CVFPDICKNLNTDHSSLVQLYRKARAVPGVKKIHIASGLRYDLAVRNPEYVKELVTHHVG
GYLKIAPEHTEPGPLGKMMKPGMGAYDEFKRMFDKAAKEAGKKLYLIPYFIAAHPGTTDE
DMMNLALWLKRNGFKADQVQTFLPSPMSLATAMYHSERNPLRPVRRVGSEIVSSAKGLKQ
RRLHKAFLRYHDPENWPILREALKRLGREDLIGPGEEHLIPGWQPVGATAKPREKGGKTF
LTQQAGQGRRVVPPVGKAPVAKPAAGAGGKPSGMKPRQTNLKGR